View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_34 (Length: 384)
Name: NF1687_low_34
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_34 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 23358102 - 23357742
Alignment:
| Q |
8 |
tgagatgaacaaggtttccttctttgtttacgctcaatatgccggatttgtcactgattggattgttgcgattggctacccaaacaactgtttttatagg |
107 |
Q |
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| T |
23358102 |
tgagaagaacaaggtttccttctttgtttacgctcaatatgccggatttgtcactgattggattgtcgcgatttgctacccaaacaactgtttttaaagg |
23358003 |
T |
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| Q |
108 |
gataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaaacccagttcaaatgctccattgaccaaggtgcttccatcatgt |
207 |
Q |
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| T |
23358002 |
gatagttttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaaacccagttcaaatgctccattgaccaaggtgcttccatcatgt |
23357903 |
T |
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| Q |
208 |
agtggaagaaattgtgttatgatatctgtttcagaggaaattttgatggnnnnnnngagtaaattaacaacaaaaaacatgatagatagaatggccattt |
307 |
Q |
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| T |
23357902 |
agtggaagaaattgtgttatgatatctgtttcagaggaaattttgatggaaaaaaagagtaaattaacaacaaaaaacatgatagatagaatggccattt |
23357803 |
T |
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| Q |
308 |
tttgtgtaagtaagaaccacccgaagttgaagataacacattaagtaggagcaaggtttta |
368 |
Q |
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| T |
23357802 |
tttgtgtaagtaagaaccacacgaaattgaagataacacattaagtaggagcaaggtttta |
23357742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 23551743 - 23551642
Alignment:
| Q |
66 |
tggattgttgcgattggctacccaaacaactgtttttatagggataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaaa |
165 |
Q |
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| T |
23551743 |
tggattatcgcgattggcaacccaaactacagtcttaaccgggatgtttttgtaccaaattccgacatagcggtttggggaattacctggactgaagaaa |
23551644 |
T |
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| Q |
166 |
cc |
167 |
Q |
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| T |
23551643 |
cc |
23551642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 10459 - 10564
Alignment:
| Q |
62 |
tgattggattgttgcgattggctacccaaacaactgtttttatagggataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaa |
161 |
Q |
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| T |
10459 |
tgattggattgtcacgattggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgtggaactacctggattgaa |
10558 |
T |
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| Q |
162 |
gaaacc |
167 |
Q |
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| T |
10559 |
gaaacc |
10564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 22692382 - 22692438
Alignment:
| Q |
113 |
ttttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaaaccca |
169 |
Q |
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| T |
22692382 |
ttttgtaccaaagtccgacatagcggtttgatgaactacctggactgaaaaaaccca |
22692438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 28417646 - 28417542
Alignment:
| Q |
65 |
ttggattgttgcgattggctacccaaacaactgtttttatagggataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaa |
164 |
Q |
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| T |
28417646 |
ttggattgtttcgatttgcaacccaaaccactcttcgaacggggatatttttgtaccatattcctacatagcggtttaaggacttaccgggtctgaagaa |
28417547 |
T |
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| Q |
165 |
accca |
169 |
Q |
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| T |
28417546 |
accca |
28417542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 28426179 - 28426075
Alignment:
| Q |
65 |
ttggattgttgcgattggctacccaaacaactgtttttatagggataattttgaaccaaattcctacatagcggtttgtggaactaccaggactgaagaa |
164 |
Q |
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| T |
28426179 |
ttggattgtttcgatttgcaacccaaaccactcttcgaacggggatatttttgtaccatattcctacatagcggtttaaggacttaccgggtctgaagaa |
28426080 |
T |
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| Q |
165 |
accca |
169 |
Q |
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||||| |
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| T |
28426079 |
accca |
28426075 |
T |
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