View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_38 (Length: 368)
Name: NF1687_low_38
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 43818086 - 43818447
Alignment:
| Q |
1 |
ctaatgttctctaattcctttgttctatactttagcatcatgcttagcttcatcgtgttattactgtgaagtattttaattcttaggagaggtagttttt |
100 |
Q |
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| T |
43818086 |
ctaatgttctctaattcctttgttctatactttagcaccatgcttagcatcatcgtgttattactgtgaagtattttaattcttaggagaggtagttttt |
43818185 |
T |
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| Q |
101 |
ggtgtcccgccaatatgcggcacctgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaattcggcgtggataatatta |
200 |
Q |
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| T |
43818186 |
ggtgtcccgccaatatgtggcacctgttatttgtttcgcttttttcgtatttatctgcgaccggtacggctttttgtagaattcggcgtggataatatta |
43818285 |
T |
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| Q |
201 |
gctgatt----nnnnnnnnnnnggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccattgtcgcgttggtatgcct |
296 |
Q |
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| T |
43818286 |
gctgattaaaaaaaaaaaaaaaggtttgttgtttatgtagggagcaacaaaactggggtaccagtaacttttgaacttccattgtcgcgttggtatgcct |
43818385 |
T |
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| Q |
297 |
tggaacatgttgctattatggtttctattccttattgagcaatgaatttaatttcacaggtt |
358 |
Q |
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| T |
43818386 |
tggaacatgttgctattgtggtttctattccttattgagcaatgaatttaatttcacaggtt |
43818447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 19873395 - 19873568
Alignment:
| Q |
26 |
tatactttagcatcatgcttagcttcatcgtgttattactgtgaagtattttaattcttaggagaggtag-tttttggtgtcccgccaatatgcggcacc |
124 |
Q |
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| T |
19873395 |
tatactttagcatcatgcttagcctatttgggtttttactgtgaagtattttaatccttgagaaaggtggttttttggtgctccgcctatatgcggtacc |
19873494 |
T |
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| Q |
125 |
tgttatttgtttctcttttttcgtatttatctgcgaccggaacagctttttgtagaattcggcgtggataatat |
198 |
Q |
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| || | |||| | |||| ||||| |||||| |||| ||| || |||| ||||| || ||| |||| ||||||| |
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| T |
19873495 |
ttttgtatgttccgctttattcgtttttatccgcgagcggtaccgcttcttgtacaactcgtcgtgaataatat |
19873568 |
T |
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