View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_39 (Length: 355)
Name: NF1687_low_39
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 5269981 - 5269662
Alignment:
| Q |
22 |
aagtatcaaagttacttttagtacactaactttttcatttggataagttcttttaaagggattttagtcatttttgttattgatttcatcatcacgcaaa |
121 |
Q |
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| T |
5269981 |
aagtatcaaagttacttttagtacaataactttttcatttggataagttcttttaaagggattttagtcttttttgttattgatttcatcatcacgcaaa |
5269882 |
T |
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| Q |
122 |
taatattctgtaagatccaacctaatttcaaagttctttagaatgatttcctctctttattagttctaaaaatcattaccaagttgactagtatgttcta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269881 |
taatattctgtaagatccaacctaatttcaaagttccttggaatgatttcctctctttattagttctaaaaatcattaccaagttgactagtatgttcta |
5269782 |
T |
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| Q |
222 |
cttaaataaaatcgaaaactacatatcaagcatatatattgccataaaaagcctttttccctaaagaaaaagaataattcttcaaaaccttcctgtaaac |
321 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5269781 |
cttaaat--aatcgaaaactacatatcaagcatatatattgccataaaaagcatttttccctaaagaaaaagaataattcttcaaaaccatcctgtaaac |
5269684 |
T |
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| Q |
322 |
tactccccgacgttgtagttcat |
344 |
Q |
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|||||||| |||||||||||||| |
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| T |
5269683 |
tactcccc-acgttgtagttcat |
5269662 |
T |
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