View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1687_low_41 (Length: 340)
Name: NF1687_low_41
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 36730268 - 36730459
Alignment:
| Q |
13 |
gaaataagtatggtcatggtcatatttagacc---------atataaattatatattttccatgagtgaccaaggactcaaaggtatatattttgaatgg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
36730268 |
gaaataagtatggtcatggtcatatttagacctattcaactatataaattatatattttccatgagtg-ccaaggacataaaggtatatattttgaatgg |
36730366 |
T |
|
| Q |
104 |
ctggatcaatcatattcaaaaagtcaataagatattgtatgctctcagcttcgcaacaattaaaactttataacttttccgactaatttttag |
196 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
36730367 |
ctagatcaatcatattcaaaaagtcaataagatattgtatgctctcagcttcgcaacaattaaatctttataacttttccgactattttttag |
36730459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 36732566 - 36732600
Alignment:
| Q |
201 |
tgttaatgtacataagaaaattagttttgctttgc |
235 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36732566 |
tgttaatgtacataagaaaattaattttgctttgc |
36732600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 324
Target Start/End: Original strand, 36732678 - 36732707
Alignment:
| Q |
295 |
gtcgtagcatatcaaattcgattaaataat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36732678 |
gtcgtagcatatcaaattcgattaaataat |
36732707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University