View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_46 (Length: 294)
Name: NF1687_low_46
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 1153924 - 1154184
Alignment:
| Q |
19 |
atatctatctacattctacaccacaaattcagtttattacacacagtactctacaagcagtagagtttcatcatctcctgtcagttccactactctgagg |
118 |
Q |
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| T |
1153924 |
atatctatctacattctacaccacaaattcagtttattacacacagtactctacaagcagtagagtttcatcatctcctgtcagttccactactctgagg |
1154023 |
T |
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| Q |
119 |
aagcatcggtactctggtcaccactcttagcctttcccagcacaataccaagctgcacaaaacagtaccaaataattaattacttgttactagcaaattg |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1154024 |
aagcatcagtactctggtcaccactcttagcctttcccagcacaataccaagctgcacaaaacagtaccagataattaattacttgttactagcaaattg |
1154123 |
T |
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| Q |
219 |
aacacaattaagtgataatccagaaatcaggaaaatgtaagaagaagaaccttagcctttg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1154124 |
aacacaattaagtgataatccagaaatcaggaaaatgtaagaagaagaaccttagcctttg |
1154184 |
T |
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