View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687_low_47 (Length: 293)

Name: NF1687_low_47
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1687_low_47
NF1687_low_47
[»] chr7 (1 HSPs)
chr7 (62-280)||(14710572-14710790)
[»] chr2 (3 HSPs)
chr2 (61-280)||(1925040-1925259)
chr2 (62-271)||(25815198-25815407)
chr2 (62-280)||(19704714-19704929)
[»] chr5 (2 HSPs)
chr5 (62-280)||(22370669-22370888)
chr5 (61-280)||(19304541-19304760)
[»] chr6 (3 HSPs)
chr6 (82-280)||(16811101-16811299)
chr6 (17-53)||(9866214-9866250)
chr6 (17-53)||(9874426-9874462)
[»] chr3 (1 HSPs)
chr3 (62-280)||(29899685-29899903)
[»] chr1 (6 HSPs)
chr1 (62-280)||(14715033-14715251)
chr1 (64-280)||(16765094-16765310)
chr1 (115-265)||(22002125-22002275)
chr1 (115-265)||(22008396-22008546)
chr1 (121-280)||(13246252-13246411)
chr1 (63-100)||(18491417-18491454)
[»] scaffold0021 (1 HSPs)
scaffold0021 (62-280)||(156-374)
[»] chr8 (3 HSPs)
chr8 (62-280)||(19463376-19463593)
chr8 (62-280)||(19561055-19561272)
chr8 (62-100)||(18394730-18394768)
[»] scaffold0285 (1 HSPs)
scaffold0285 (61-280)||(8951-9170)
[»] chr4 (1 HSPs)
chr4 (61-100)||(17735975-17736014)
[»] scaffold0047 (1 HSPs)
scaffold0047 (64-100)||(57679-57715)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 62 - 280
Target Start/End: Original strand, 14710572 - 14710790
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||    
T  14710572 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattctgttgta 14710671  T
Q  162 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14710672 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttattttcgtcaacacgta 14710771  T
Q  262 ttaaccgttccagtataat 280  Q
    |||||||||| ||||||||    
T  14710772 ttaaccgttctagtataat 14710790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 61 - 280
Target Start/End: Complemental strand, 1925259 - 1925040
Alignment:
Q  61 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||    
T  1925259 tcactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattctgttgt 1925160  T
Q  161 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  1925159 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacagatttttgtttgttattttcgtcaacacgt 1925060  T
Q  261 attaaccgttccagtataat 280  Q
    ||||||||||| ||||||||    
T  1925059 attaaccgttctagtataat 1925040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 62 - 271
Target Start/End: Complemental strand, 25815407 - 25815198
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         || ||  |||||||||||| ||||||||||||||||| ||||||     
T  25815407 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaattgttttcatagagtcccatggacaacgattttctgattttgttgtg 25815308  T
Q  162 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 261  Q
     |||| |||  ||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||    
T  25815307 gtaggatatgctattttttcaatttatttgtaacaactcaaaagtgttgtggtataagaaacgagaacggatttttatttgttatttttgtcaacatgta 25815208  T
Q  262 ttaaccgttc 271  Q
    ||||| ||||    
T  25815207 ttaactgttc 25815198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 280
Target Start/End: Original strand, 19704714 - 19704929
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    |||||||||||||||| ||    |||||||||||||||||||||||       ||||  || |||||||||||| ||||||||||||||||| |||||||    
T  19704714 cactacaacattttggtcc----acaacgcctaaattttggaaggtaaaaaaaccgttctgatagagtcccatggacaacgattttctgattttgttgta 19704809  T
Q  162 atagggtataatattttttcaatttattc-gtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 260  Q
     ||  |||| ||||||||| | ||| ||  ||||| |||| |||||||||||||||||||||| | ||||||||||| |||||||||| |||||||| ||    
T  19704810 gtaatgtatgatattttttaatttttttttgtaacgactcaaaagcgttgtggtataagaaacaagaacggatttttatttgttatttccgtcaacatgt 19704909  T
Q  261 attaaccgttccagtataat 280  Q
    |||||| ||||  |||||||    
T  19704910 attaactgttctggtataat 19704929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 62 - 280
Target Start/End: Original strand, 22370669 - 22370888
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||       |||| |||||||||||||||||||||||||||||||||| |||||||    
T  22370669 cactacaacattttgaccctacgacaacgcctaaattttgaaaggtaaaaaaaccgttttggtagagtcccatgaacaacgattttctgattatgttgta 22370768  T
Q  162 atagggtataatatttt-ttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 260  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22370769 atagggtataatatttttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttattttcgtcaacacgt 22370868  T
Q  261 attaaccgttccagtataat 280  Q
    ||||||| ||| ||||||||    
T  22370869 attaaccattctagtataat 22370888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 61 - 280
Target Start/End: Original strand, 19304541 - 19304760
Alignment:
Q  61 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 160  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||         ||  ||||||||| ||||| ||||||||||||| |||||||| |    
T  19304541 tcactacaatattttggccctacaacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtaccatggacaacgattttctaattctgtttt 19304640  T
Q  161 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 260  Q
    |||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||| |     
T  19304641 aatagcatatgatattttttcaatttatttgtaacaactcaaaagcgttgtggtataagaaacgagaacagatttttatttgttatttttgtcaacatgc 19304740  T
Q  261 attaaccgttccagtataat 280  Q
    |||||| ||||  |||||||    
T  19304741 attaactgttctggtataat 19304760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 82 - 280
Target Start/End: Complemental strand, 16811299 - 16811101
Alignment:
Q  82 acgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttc 181  Q
    |||| |||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  16811299 acgataacgcctaaattttggaaggtaaaaaaaccgtcttggtagagtcccatggacaacgattttctgattatgttgtaataggatataatattttttc 16811200  T
Q  182 aatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaaccgttccagtataat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  16811199 aatttattcgtaacaactcgaaagcgttgtggtataagaaacgagaacggatttttgtttgttatattcgtcaatacgtattaaccgttctagtataat 16811101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 9866250 - 9866214
Alignment:
Q  17 aataaagattaatatctccattttttattgtatacta 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  9866250 aataaagattaatatctccattttttattgtatacta 9866214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 9874426 - 9874462
Alignment:
Q  17 aataaagattaatatctccattttttattgtatacta 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  9874426 aataaagattaatatctccattttttattgtatacta 9874462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 280
Target Start/End: Original strand, 29899685 - 29899903
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||       ||||| ||||||||||| ||| ||||||||||||| ||| |||||||    
T  29899685 cactacaacattttggccctacgacaacgcctaaattttggaaagtaaaaaaaccgtcctggtagagtccgatgcacaacgattttctaattttgttgta 29899784  T
Q  162 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 261  Q
     |||||||  ||||||||| ||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||| |||    
T  29899785 ttagggtaggatattttttaaatttttttataacaactcgaaagcgttgtggtataagaaacgagaacggatttttatttattactttcgtcaacatgta 29899884  T
Q  262 ttaaccgttccagtataat 280  Q
    ||||| ||||  |||||||    
T  29899885 ttaactgttctggtataat 29899903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 280
Target Start/End: Complemental strand, 14715251 - 14715033
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||       ||||| ||||||||||| ||| ||||||||||||| ||| |||||||    
T  14715251 cactacaacattttggccctacgacaacgcctaaattttggaaagtaaaaaaaccgtcctggtagagtccgatgcacaacgattttctaattttgttgta 14715152  T
Q  162 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 261  Q
     |||||||  ||||||||| ||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||| |||    
T  14715151 ttagggtaggatattttttaaatttttttataacaactcgaaagcgttgtggtataagaaacgagaacggatttttatttattactttcgtcaacatgta 14715052  T
Q  262 ttaaccgttccagtataat 280  Q
    ||||| ||||  |||||||    
T  14715051 ttaactgttctggtataat 14715033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 64 - 280
Target Start/End: Complemental strand, 16765310 - 16765094
Alignment:
Q  64 ctacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaat 163  Q
    ||||||||||||||| ||||||||||||||||||||||||||||         ||  ||||||||||||||| |||||||||||||||||||||| || |    
T  16765310 ctacaacattttggctctacgacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtcccatggacaacgattttctgattctgttttagt 16765211  T
Q  164 agggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtatt 263  Q
    || |||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| |||||||||||  |||||| |||||    
T  16765210 agcgtatgatattttttaaatttatttgtaacaactgaaaagcgttgtggtataagaaacgagaacggatttttatttgttatttttatcaacatgtatt 16765111  T
Q  264 aaccgttccagtataat 280  Q
    ||||||||  |||||||    
T  16765110 aaccgttctggtataat 16765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 115 - 265
Target Start/End: Original strand, 22002125 - 22002275
Alignment:
Q  115 ccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggt 214  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||| ||||| || ||||| |||| ||||||||||| |    
T  22002125 ccgtcctggtagagtcccatggacaacgattttctgattttgttgtagtagggtatgatattttttaaatttttttgtaacgactcaaaagcgttgtgat 22002224  T
Q  215 ataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaa 265  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  22002225 ataagaaacaagaacggatttttatttgttattttcgtcaacatgtattaa 22002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 115 - 265
Target Start/End: Original strand, 22008396 - 22008546
Alignment:
Q  115 ccgtcttggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggt 214  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||| ||||| || ||||| |||| ||||||||||| |    
T  22008396 ccgtcctggtagagtcccatggacaacgattttctgattttgttgtagtagggtatgatattttttaaatttttttgtaacgactcaaaagcgttgtgat 22008495  T
Q  215 ataagaaacgaaaacggatttttgtttgttattttcgtcaacacgtattaa 265  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  22008496 ataagaaacaagaacggatttttatttgttattttcgtcaacatgtattaa 22008546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 121 - 280
Target Start/End: Original strand, 13246252 - 13246411
Alignment:
Q  121 tggtagagtcccatgaacaacgattttctgattctgttgtaatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataaga 220  Q
    ||||||||| ||||| |||||||||||||||||||| |||| || ||||| |||||||||||||||||| |||||||||| ||||| |||| || |||||    
T  13246252 tggtagagttccatggacaacgattttctgattctgctgtagtaaggtatgatattttttcaatttatttgtaacaactcaaaagcattgtagtttaaga 13246351  T
Q  221 aacgaaaacggatttttgtttgttattttcgtcaacacgtattaaccgttccagtataat 280  Q
    |||  ||| | |||||| ||||||||||| |||| || |||||||| ||||  |||||||    
T  13246352 aacataaatgaatttttatttgttatttttgtcagcatgtattaactgttctggtataat 13246411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 18491454 - 18491417
Alignment:
Q  63 actacaacattttggccctacgacaacgcctaaatttt 100  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  18491454 actacaacattttgggcctacgacaacgcctaattttt 18491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 280
Target Start/End: Complemental strand, 374 - 156
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||  ||||||||| ||||| ||||||||||||| |||||||| ||    
T  374 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaatattgttctggtagagtaccatggacaacgattttctaattctgtttta 275  T
Q  162 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 261  Q
    ||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||| ||||||||||| ||||||| | |    
T  274 atagcatatgatattttttcaatttatttgtaacaactcaaaagcgttgtggtataagaaacgagaatggatttttatttgttatttttgtcaacatgca 175  T
Q  262 ttaaccgttccagtataat 280  Q
    ||||| ||||  |||||||    
T  174 ttaactgttctggtataat 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 280
Target Start/End: Original strand, 19463376 - 19463593
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||       || || ||||||||||||||| ||||||||||||||||| |||||||    
T  19463376 cactacaacattttggctctacgacaacgcctaaatttcggaaggtaaaaaaaccctcctggtagagtcccatggacaacgattttctgattttgttgta 19463475  T
Q  162 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 261  Q
     |||||||| ||||||||||||||| ||  |||| |||| ||||||||||| |||||||||| | ||||||||||| ||||||||||||| ||||| |||    
T  19463476 gtagggtatgatattttttcaattt-tttataacgactcaaaagcgttgtgatataagaaacaagaacggatttttatttgttattttcggcaacatgta 19463574  T
Q  262 ttaaccgttccagtataat 280  Q
    ||||| |||| ||||||||    
T  19463575 ttaactgttctagtataat 19463593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 280
Target Start/End: Original strand, 19561055 - 19561272
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgta 161  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||       || || ||||||||||||||| ||||||||||||||||| |||||||    
T  19561055 cactacaacattttggctctacgacaacgcctaaatttcggaaggtaaaaaaaccctcctggtagagtcccatggacaacgattttctgattttgttgta 19561154  T
Q  162 atagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgta 261  Q
     |||||||| ||||||||||||||| ||  |||| |||| ||||||||||| |||||||||| | ||||||||||| ||||||||||||| ||||| |||    
T  19561155 gtagggtatgatattttttcaattt-tttataacgactcaaaagcgttgtgatataagaaacaagaacggatttttatttgttattttcggcaacatgta 19561253  T
Q  262 ttaaccgttccagtataat 280  Q
    ||||| |||| ||||||||    
T  19561254 ttaactgttctagtataat 19561272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 18394730 - 18394768
Alignment:
Q  62 cactacaacattttggccctacgacaacgcctaaatttt 100  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  18394730 cactacaacattttagccctacgacaacgcctaattttt 18394768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 61 - 280
Target Start/End: Complemental strand, 9170 - 8951
Alignment:
Q  61 tcactacaacattttggccctacgacaacgcctaaattttggaaggtnnnnnnnccgtcttggtagagtcccatgaacaacgattttctgattctgttgt 160  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||         ||  ||||||||||||||| || ||||||||||||||||||| |    
T  9170 tcactacaacattttggctctacgacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtcccatggactacgattttctgattctgtttt 9071  T
Q  161 aatagggtataatattttttcaatttattcgtaacaactcgaaagcgttgtggtataagaaacgaaaacggatttttgtttgttattttcgtcaacacgt 260  Q
    | ||| |||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||| | ||||||||||| |||||||||||  |||||| ||    
T  9070 agtagcgtatgatattttttaaatttatttgtaacaactaaaaagcgttgtggtataagaaacaagaacggatttttatttgttatttttttcaacatgt 8971  T
Q  261 attaaccgttccagtataat 280  Q
    |||||||||||  |||||||    
T  8970 attaaccgttctggtataat 8951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 17736014 - 17735975
Alignment:
Q  61 tcactacaacattttggccctacgacaacgcctaaatttt 100  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  17736014 tcactacaacattttggccctacgacaacgtctaattttt 17735975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 57715 - 57679
Alignment:
Q  64 ctacaacattttggccctacgacaacgcctaaatttt 100  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  57715 ctacaacattttggctctacgacaacgcctaattttt 57679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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