View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_49 (Length: 291)
Name: NF1687_low_49
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_49 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 7917079 - 7917350
Alignment:
| Q |
20 |
caatctataacctaaataactaatcttaaaatttgagttggacataatacaatatctattacttataaattaattgtcatgcatgttttattcaatgtct |
119 |
Q |
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| T |
7917079 |
caatctataacctaaataactaatcttaaaatttgagttggacataattcaatatctattacttataaattaattgtcatgcatattttattcaatgtct |
7917178 |
T |
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| Q |
120 |
aactcttagcattaaccattacgctaattattagacatctgaaacgtaatctccgtagtccaatagtggtgactgaatagcacacaacacaattaatctt |
219 |
Q |
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| T |
7917179 |
aactcttagcattaaccattacgctaattattagacatctgaaacgtaatctccgtagtccaatagtggtgactgaatagcacacaacacaattaatctt |
7917278 |
T |
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| Q |
220 |
aaaatgaactatcatctcattatagaatttcactcaaaaattaatttctaaggtaagtattatctacccacc |
291 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7917279 |
aaaatgaactatgatctcattatagaatttcactcaaaaattaatttctaaggtaagtattacgtacccacc |
7917350 |
T |
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