View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_50 (Length: 286)
Name: NF1687_low_50
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 17345022 - 17345280
Alignment:
| Q |
11 |
taattctaaagcaaaaggtaaaagaaaagtgttaccagtgactgcttttctttgcacaaaggnnnnnnnnnggatatatatttattttgcattaaaaata |
110 |
Q |
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| T |
17345022 |
taattctaaagcaaaaggtaaaagaaaagtgttaccagtgactgcttttctttgcacaaaggaaaaaaa--ggatatatatttattttgcattaaaaata |
17345119 |
T |
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| Q |
111 |
ttcaattgaaagtgcatggtaaannnnnnnnnnnnnnnnnnnnntcatttgagttggagaggtgagaaaaatctgaaaaatgggttacttcaaacaatgt |
210 |
Q |
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| T |
17345120 |
ttcaattgaaagtgcatggtagattttttttggttttgattttgtcatttgagttggagaggtgagaaaaatctgaaaaatgggttactccaaacaatgt |
17345219 |
T |
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| Q |
211 |
tttctcttgtttttggtagtgttacttgttgcatgtgcaaatggagaagatccttataggt |
271 |
Q |
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| T |
17345220 |
tatgtcttgttgttggtagtgttacttgttgcatgtgcaaatggagaagatccttataggt |
17345280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 17139335 - 17139219
Alignment:
| Q |
155 |
tcatttgagttggagaggtgagaaaaatctgaaaaatgggttacttcaaacaatgttttctcttgtttttggtagtgttacttgttgcatgtgcaaatgg |
254 |
Q |
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| T |
17139335 |
tcatttgagttggagagttaagaaaaaactgagaaatgggttatttaaaacaatgttctgtcttattgttggtagtgttacttgttgcatgtgcaaatgg |
17139236 |
T |
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| Q |
255 |
agaagatccttataggt |
271 |
Q |
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| T |
17139235 |
agaagatccttataggt |
17139219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 17139420 - 17139475
Alignment:
| Q |
11 |
taattctaaagcaaaaggtaaaagaaaagtgttaccagtgactgcttttctttgca |
66 |
Q |
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| T |
17139420 |
taattctaaagcaaaaagtaaaagaaaagtgtaggcagttactgtttttctttgca |
17139475 |
T |
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