View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_6 (Length: 666)
Name: NF1687_low_6
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 32856333 - 32855987
Alignment:
| Q |
1 |
ttactaatgacaaaggttagtaattagttgttaaatttagatctatttctttgtccacgttcgaacccagaacccccaactctttctctcttaactcaaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856333 |
ttacgaatgacaaaggttagtaattagttgttaaatttagatctatttctctgtccacgttcgaacccagaacccccaactctttctctcttaactcaaa |
32856234 |
T |
|
| Q |
101 |
gcaagagctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgt |
200 |
Q |
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| T |
32856233 |
gcaagagctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgt |
32856134 |
T |
|
| Q |
201 |
gcagaaattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtagtagccacagagtgcagaacagttacagtgctttgaagatannn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856133 |
gcagaaattaaagtgtgatttctttccaaagagagatgatttattgggtgacggtagtagccacagagtgcagaacagttacagtgctttgaagatattt |
32856034 |
T |
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| Q |
301 |
nnnnnnnnnnnnncttccagctggagatattatcttagttcaaaggg |
347 |
Q |
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| T |
32856033 |
tctttttgtttttcttccagctggagatattatcttagttcaaaggg |
32855987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 381 - 650
Target Start/End: Complemental strand, 32855953 - 32855684
Alignment:
| Q |
381 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
480 |
Q |
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| T |
32855953 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
32855854 |
T |
|
| Q |
481 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaattgatgtg |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32855853 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgattgatgtg |
32855754 |
T |
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| Q |
581 |
agcttttaaactttataatacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccac |
650 |
Q |
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| T |
32855753 |
agcttttaaactttataatacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccac |
32855684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 446 - 631
Target Start/End: Complemental strand, 32850489 - 32850285
Alignment:
| Q |
446 |
ttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttcagctggaaaggacctga--------------gtatcagaatgactaa |
531 |
Q |
| |
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|||||||| |||||||| ||| || |||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||| |
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| T |
32850489 |
ttgttgcacttagtaacttttagcaaccccaacaggtagcagttggtattttcagctggaaaggacctgataatccctaaagttgtatcagcatgactaa |
32850390 |
T |
|
| Q |
532 |
tgatgatttgagcatgtagag--------cagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaatt |
623 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32850389 |
tgat---ttgagcatgtagaggcgtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaatt |
32850293 |
T |
|
| Q |
624 |
caacacca |
631 |
Q |
| |
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|||||||| |
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|
| T |
32850292 |
caacacca |
32850285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 32850766 - 32850670
Alignment:
| Q |
158 |
ttagaaatagattaaaaagtgtatctgtttctacataaattgtgcagaaattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtag |
257 |
Q |
| |
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|||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||| | || |||||| |||||||||| | ||||| ||||| |
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| T |
32850766 |
ttagaaatagatgaaaaagtgtagctgtttctgcataaattgtgcag-----gaagtgtgattaccttgcaaagatagatgatttactaggtgacggtag |
32850672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 32850561 - 32850520
Alignment:
| Q |
382 |
gggaaaaataaaactacaagcgtgggagatgtggtcttgcac |
423 |
Q |
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| T |
32850561 |
gggaaaaataaaactacaatcgtgggagatggggtcttgcac |
32850520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 32850625 - 32850592
Alignment:
| Q |
314 |
cttccagctggagatattatcttagttcaaaggg |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
32850625 |
cttccagctggagatattatcttagttcaaaggg |
32850592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 10223394 - 10223426
Alignment:
| Q |
5 |
taatgacaaaggttagtaattagttgttaaatt |
37 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
10223394 |
taatgacaaatgttagtaattagttgttaaatt |
10223426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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