View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_64 (Length: 247)
Name: NF1687_low_64
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 580977 - 580764
Alignment:
| Q |
16 |
attattctaaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataatatacttacctttgatgattcgaatttgatagatttt |
115 |
Q |
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| T |
580977 |
attattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataatatacttacctttgatgactcgaatttgatagatttt |
580878 |
T |
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| Q |
116 |
gagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagccgaagcatggc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
580877 |
gagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagctgaagcatggc |
580778 |
T |
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| Q |
216 |
atggggacttaatt |
229 |
Q |
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|||||||||||||| |
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| T |
580777 |
atggggacttaatt |
580764 |
T |
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