View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687_low_71 (Length: 239)

Name: NF1687_low_71

Description: NF1687

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1687_low_71

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 143; E-Value: 3e-75

Query Start/End: Original strand, 28 - 239

Target Start/End: Complemental strand, 16069975 - 16069769

Alignment:

Q	28	atatagtttatcatattcaaattgtttaataacgatttccaacttgtcgtattgttttcacctaatcaaataaaatttgtcttgttttatgttcaggata	127	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	16069975	atatagtttatcggatacaaattgattaacaacgatttccaacttgtcttattgttttcacctaatcaaataatatttgtcttgttttacgttcaggata	16069876	T

Q	128	agtaatatagttcttgagcttggaaaatcagcacataaccgtaattttgtatccctaagattagattagaagaagttttatagaaaacagcaacttgtga	227	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	16069875	agtaata--gttcttgagcttggaaaatcagcacataaccttaattttgtatccctaagataagattagaagaagttttatagaaaa---caacttgtga	16069781	T

Q	228	ttttattcattt	239	Q
		\|\|\|\|\|\|\| \|\|\|\|
T	16069780	ttttattgattt	16069769	T

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Target: chr8; HSP #2

Raw Score: 56; E-Value: 2e-23

Query Start/End: Original strand, 1 - 84

Target Start/End: Complemental strand, 16061285 - 16061202

Alignment:

Q	1	cataggacaaaaaagactggtggttgcatatagtttatcatattcaaattgtttaataacgatttccaacttgtcgtattgttt	84	Q
		\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	16061285	cataagacacaaaagactggtggttgcatatagtttatcagatacaaattgattaataacggtttccaacttgtcttattgttt	16061202	T

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