View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_76 (Length: 225)
Name: NF1687_low_76
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_76 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 16069079 - 16069296
Alignment:
| Q |
6 |
acagctggtgttggttctagatgtaggcatgagaattcctttaccagatttccagttttttcaagaaacaaccatgcgatgttgagacaagtatgagctc |
105 |
Q |
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| T |
16069079 |
acagctggtgttggttctagatgtaggtattagaattcttttaccagattttcagttttttcaagaaacaaccatgcgatgttgacacaaatatgagctc |
16069178 |
T |
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| Q |
106 |
aaattaaacttccgtatgctgaaaaggaaaactgaagaaagttttaacggttcaaagaatcatatttgcaatgatttggctttggtacatccagaaagta |
205 |
Q |
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| T |
16069179 |
aaattaaacttccgtatgctgaaaaggaaaactgaagaaagtttcaacggttcaaagaatcatatttgcaatgatttggctttggtacatcc--aaagta |
16069276 |
T |
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| Q |
206 |
cattcgagatcgatacagtc |
225 |
Q |
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| T |
16069277 |
cattcgagatcgatacagtc |
16069296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 16074969 - 16075185
Alignment:
| Q |
11 |
tggtgttggttctagatgtaggcatgagaattcctttaccagatttccagttttttc--aagaaacaaccatgcgatgttgagacaagtatgagctcaaa |
108 |
Q |
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| T |
16074969 |
tggtgttggctctagatgtaggcatcataattccgttactagatttgcattttttttggaagaaacattcgtgcgacgatgacaaagacacgagctcaaa |
16075068 |
T |
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| Q |
109 |
ttaaacttccgtatgctgaaaaggaaaactgaagaaagttttaacggttcaaagaatcatatttgcaatgatttggctttggtacatccagaaagtacat |
208 |
Q |
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| T |
16075069 |
ttcaaaccccgtatgttgaaaaggaaagctaaagaaagtttcaatggttcaaagaatcatatttgcaatgatttggctatggtacatccggaaagtagat |
16075168 |
T |
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| Q |
209 |
tcgagatcgatacagtc |
225 |
Q |
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| T |
16075169 |
tggatatcgatacagtc |
16075185 |
T |
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