View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_77 (Length: 221)
Name: NF1687_low_77
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_77 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 16685061 - 16685281
Alignment:
| Q |
1 |
atgtaaaccaaaacatttcatctccaaaggaaatcttccacctcgaccgtccctatctgaattgtccatagcatcattcatcaagttcgatacgacgccg |
100 |
Q |
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| T |
16685061 |
atgtaaaccaaaacatttcatctccaaaggaaatcttccacctcgaccgtccctatctgaattgtccatagcatcattcatcaagttcgatacgacgccg |
16685160 |
T |
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| Q |
101 |
cttgtccttaccatcgaatccacaataagtttttgttcactcttcaaattctcatcttgcatcattgaaagcaatcccataactgaatgcattggccttc |
200 |
Q |
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| T |
16685161 |
cttgtccttaccatcgaatccacaataagtttctgttcactcttcaaattctcatcttgcatcattgaaagcaatcccataactgaatgcattggccttc |
16685260 |
T |
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| Q |
201 |
ccattccattactcatgactt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
16685261 |
ccattccattactcatgactt |
16685281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 32789968 - 32789810
Alignment:
| Q |
63 |
tgtccatagcatcattcatcaagttcgatacgacgccgcttgtccttaccatcgaatccacaataagtttttgttcactcttcaaattctcatcttgcat |
162 |
Q |
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||||||| |||||||| |||||||| |||| ||| ||| ||| ||| ||| | |||||||||||| || |||||| |||| ||||| || ||||| || |
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| T |
32789968 |
tgtccatggcatcatttatcaagtttgataggacattgctcgtctttaacattgcatccacaataagcttctgttcattctttaaattatcgtcttgtat |
32789869 |
T |
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| Q |
163 |
cattgaaagcaatcccataactgaatgcattggccttcccattccattactcatgactt |
221 |
Q |
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| T |
32789868 |
cattgaaagcaatcccaaaatcgagtgcataggcctcctcataccatcactcatgactt |
32789810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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