View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_8 (Length: 640)
Name: NF1687_low_8
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 15 - 624
Target Start/End: Complemental strand, 52601561 - 52600973
Alignment:
| Q |
15 |
tatagatgtctgccttttcagatagttctcctctaattgcatattcaggagctgtataacctctaatcataagagacaaaacgaaatgaagatcaataaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52601561 |
tatagatgtctgccttttcagatagttctcctctaattgcatattcaggagctgtataacctctaatcataagagacaaaaagaaatgaagatcaataaa |
52601462 |
T |
|
| Q |
115 |
aaatttgaagtgacacggacactgagcacgacactcacatgtcatccatagtactaatttgagaaaataaattattttaatgtaatcttatgtgtcggtg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52601461 |
aaatttgaagtgacacggacactgagcacgacactcacatgtcatccatagtactaatttgagaaaataaattattttaatgtaatcttatgtgtgggtg |
52601362 |
T |
|
| Q |
215 |
tctgaatcatgtcaattgaatataggacttacaatgttccggcaaactgagtgctaaggtaagcttggtcttcagggaagaacctagctagtccaaaatc |
314 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52601361 |
tctgaatcgtgccaattgaatataggacttacaatgttccggcaaactgagtgctaaggtaagcttggtcttcagggaagaacctagctagtccaaaatc |
52601262 |
T |
|
| Q |
315 |
tccaatcctcggctgaaacttttcgtcaagaagaatgttgcttgctttaatatctcggtgaacaattcttacatgtgaatcctcgtgaaggtattgcaat |
414 |
Q |
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| T |
52601261 |
tccaatcctcggctgaaacttttcgtcaagaagaatgttgcttgctttaatatctcggtgaacaattcttacatgtgaatcctcgtgaaggtattgcaat |
52601162 |
T |
|
| Q |
415 |
cctcgtgctactccaagaataatttggaatctagtgctccaattaagaaattcatcactcttccctgatcacagtggaacatcaagcgtaacagttattt |
514 |
Q |
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| T |
52601161 |
cctcgtgctactccaagaataatttggaatctagtgctccaattaagaaattcatcactcttccctgatcacagtggaacatcaagcgtaa--------- |
52601071 |
T |
|
| Q |
515 |
aatttgtacaaactatatattcagttctttcatagcttcaagaaaaatactatttccgaaggataaaatgtatagtataaagatatagaatggacattgg |
614 |
Q |
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| T |
52601070 |
aat--------acta----ttcagttctttcatagcttcaagaaaaatactatttccgaaggataaaatgtatagtataaagatatagaatggacattgg |
52600983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 244 - 458
Target Start/End: Original strand, 16910148 - 16910362
Alignment:
| Q |
244 |
tacaatgttccggcaaactgagtgctaaggtaagcttggtcttcagggaagaacctagctagtccaaaatctccaatcctcggctgaaacttttcgtcaa |
343 |
Q |
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| T |
16910148 |
tacaatgttcctgcaaactgtgtgctaagataagcttggtcttctggaaaaaatcttgctagcccaaagtcaccaattctaggcaaaaacttgtcatcaa |
16910247 |
T |
|
| Q |
344 |
gaagaatgttgcttgctttaatatctcggtgaacaattcttacatgtgaatcctcgtgaaggtattgcaatcctcgtgctactccaagaataatttggaa |
443 |
Q |
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| T |
16910248 |
gaagaatgttgcttgctttgatatctctatgaacaattcttaggtgtgaatcttcatgaaggtattgaagtccacgtgctactccaagtatgatttgata |
16910347 |
T |
|
| Q |
444 |
tctagtgctccaatt |
458 |
Q |
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| T |
16910348 |
cctagtgctccaatt |
16910362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 16909761 - 16909826
Alignment:
| Q |
15 |
tatagatgtctgccttttcagatagttctcctctaattgcatattcaggagctgtataacctctaa |
80 |
Q |
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||||||| || |||||||| |||| ||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
16909761 |
tatagatatcagccttttctgataattcccctctaatagcatattcaggagctgtatatcctctaa |
16909826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 3148161 - 3148208
Alignment:
| Q |
169 |
taatttgagaaaataaattattttaatgtaatcttatgtgtcggtgtc |
216 |
Q |
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|||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
3148161 |
taatttgagaaaataaattaatttaatataatcacatgtgtcggtgtc |
3148208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 879173 - 879125
Alignment:
| Q |
166 |
tactaatttgagaaaataaattattttaatgtaatcttatgtgtcggtg |
214 |
Q |
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||||||||| ||||||| |||||||| ||||||||| ||||||||||| |
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| T |
879173 |
tactaatttaagaaaattaattatttgaatgtaatcacatgtgtcggtg |
879125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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