View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687_low_83 (Length: 209)

Name: NF1687_low_83
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1687_low_83
NF1687_low_83
[»] chr5 (2 HSPs)
chr5 (8-191)||(26105504-26105688)
chr5 (13-53)||(2243330-2243370)
[»] chr8 (2 HSPs)
chr8 (16-53)||(32166652-32166689)
chr8 (77-141)||(39280914-39280978)
[»] chr6 (2 HSPs)
chr6 (13-53)||(23577172-23577212)
chr6 (13-53)||(32047195-32047235)
[»] chr2 (1 HSPs)
chr2 (13-53)||(16576269-16576309)
[»] chr1 (1 HSPs)
chr1 (13-53)||(52432682-52432722)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 26105504 - 26105688
Alignment:
Q  8 gtgagatgaaggagatggagaagtttgatgttctttagatgaaaattgttcacgtatgac----accagtccaaaaatggtaatagattttaagaataaa 103  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||| |||| |||||||||    
T  26105504 gtgaaatgaaggagatggagaagtttgatgttctttagataaaaattgttcacgtatgacctataccagtccaaaaatggtaataaatttaaagaataaa 26105603  T
Q  104 gataaagcaatggagatttttcgttgattgaggtaaataattaccaccaattcatcaaggcttaacgtagaaaaaacaagttatacat 191  Q
    |||||||||||||||||||||| ||||||||| ||   |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26105604 gataaagcaatggagatttttcattgattgagata---aattaccatcaattcatcaaggcttaacgtagaaaaaacaagttatacat 26105688  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 2243330 - 2243370
Alignment:
Q  13 atgaaggagatggagaagtttgatgttctttagatgaaaat 53  Q
    |||||||| ||| ||||||||||||||||| ||||||||||    
T  2243330 atgaaggatatgaagaagtttgatgttcttgagatgaaaat 2243370  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 32166652 - 32166689
Alignment:
Q  16 aaggagatggagaagtttgatgttctttagatgaaaat 53  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  32166652 aaggagatgaagaagtttgatgttcttgagatgaaaat 32166689  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 39280978 - 39280914
Alignment:
Q  77 aaaatggtaatagattttaagaataaagataaagcaatggagatttttcgttgattgaggtaaat 141  Q
    ||||||||||  |||||||||||||||||| ||| || || |||||||| ||||| | |||||||    
T  39280978 aaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgataggggtaaat 39280914  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 23577212 - 23577172
Alignment:
Q  13 atgaaggagatggagaagtttgatgttctttagatgaaaat 53  Q
    ||||||||||||||||||| ||||||| || ||||||||||    
T  23577212 atgaaggagatggagaagtatgatgtttttgagatgaaaat 23577172  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32047235 - 32047195
Alignment:
Q  13 atgaaggagatggagaagtttgatgttctttagatgaaaat 53  Q
    ||||| |||||| ||||||||||||||||| ||||||||||    
T  32047235 atgaatgagatgaagaagtttgatgttcttgagatgaaaat 32047195  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 16576309 - 16576269
Alignment:
Q  13 atgaaggagatggagaagtttgatgttctttagatgaaaat 53  Q
    |||||||||||| ||||||||||||||||| ||| ||||||    
T  16576309 atgaaggagatgaagaagtttgatgttcttgagaggaaaat 16576269  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 52432722 - 52432682
Alignment:
Q  13 atgaaggagatggagaagtttgatgttctttagatgaaaat 53  Q
    |||||||||||| |||||||| |||||||| ||||||||||    
T  52432722 atgaaggagatgaagaagtttaatgttcttgagatgaaaat 52432682  T

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