View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_84 (Length: 202)
Name: NF1687_low_84
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 38279796 - 38279967
Alignment:
| Q |
18 |
cttttcgcacgtccttcaaattgatcattttgtttttgtttagattttataatccaaagtgtaattgaaatttttcggatattaaaatctgaacatgtgt |
117 |
Q |
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| T |
38279796 |
ctttttgcacgtccttcaaattgatcattttgtttttgtttagattttataaaccaaagtgtaattgaaatttttcggatattaaaatctgaacatgtgt |
38279895 |
T |
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| Q |
118 |
ttagacagctttgatcaaattcaactcacattgtgttgtggatatattgaaaagtcaaattatatattcatc |
189 |
Q |
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| T |
38279896 |
ttagacagctttgatcaaattcaactcacattgtgttgcggatatattgaaaagtcaaattatatattcatc |
38279967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 38274121 - 38274227
Alignment:
| Q |
34 |
caaattgatcattttgtttttgtttagattttataatccaaagtgtaattgaaatttttcggatattaaaatctgaacatgtgtttagacagctttgatc |
133 |
Q |
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| T |
38274121 |
caaattgatcattttacctttatttggattttataatccaaagagtatttgacattttttagattataaaatctgaac-tgtatttatacaattttgatc |
38274219 |
T |
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| Q |
134 |
aaattcaa |
141 |
Q |
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| T |
38274220 |
aaattcaa |
38274227 |
T |
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