View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687_low_9 (Length: 623)
Name: NF1687_low_9
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 47686260 - 47686552
Alignment:
| Q |
16 |
gttaatgacactatctatggtttggttcagtgtacaccagatttgtctaaacaagaatgtactgaatgtttggattcggctttcgggaatttttcaagat |
115 |
Q |
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| T |
47686260 |
gttaatgacactatttatggtttggttcagtgtacaccagatttgtctaaacaagaatgtactgaatgtttggattcggctttcgggaatttttcaagat |
47686359 |
T |
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| Q |
116 |
ggtgtatgaaaggttgtatgtatcttggtccaagttgttcatttagatatgacatagttccatttttccagtccattttcaacaatacagagtcaccagc |
215 |
Q |
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| T |
47686360 |
ggtgtatgaaaggttgtatgtatcttggtccaagttgttcatttagatatgacatagttccatttttccaatccattttcaacaatacagagtcaccagc |
47686459 |
T |
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| Q |
216 |
accacagccttcgaaagtaattgctcctgcactttctcctaaaccacgaaaaggtatacatttccccttattatccctatattttaagatccc |
308 |
Q |
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| T |
47686460 |
accacagccttcgaaagtaattgctcctgcactttctcctaaaccacgaaaaggtatacatttccccttattatccctatattttaagatccc |
47686552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 379 - 613
Target Start/End: Original strand, 47686623 - 47686857
Alignment:
| Q |
379 |
tgtgagatgtcctctcaataaaaaattgggagattttttaaatgaatcattgtgattgttagaagatgaaatgctacttaagaatgatacataatttctg |
478 |
Q |
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| T |
47686623 |
tgtgagatgtcctctaaataaaaaattgtgagattttttaaatgaatcattgtgattgttagaagatgaaatgctacttaagaatgatacataatttctg |
47686722 |
T |
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| Q |
479 |
gaaataaggaaaacaannnnnnnnagcatttttattgtttcttaaaatatgcacacaatttataagctagttcctctataattaactgagttttattgta |
578 |
Q |
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| T |
47686723 |
gaaataaggaaaacaattttttttagcatttttattgtttcttaaaatatgcacacaatttataagctagttcctctataattaactgagttttattgta |
47686822 |
T |
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| Q |
579 |
ccattaaacatgagcattttattgtttcccctttg |
613 |
Q |
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| T |
47686823 |
ccattaaacatgagcattttattgtttcccctttg |
47686857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 47674148 - 47674299
Alignment:
| Q |
18 |
taatgacactatctatggtttggttcagtgtacaccagatttgtctaaacaagaatgtactgaatgtttggattcggctttcgggaatttttcaagatgg |
117 |
Q |
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| T |
47674148 |
taatgacacaatttatggtttggttcagtgtacaccggatctgtctaagcaagaatgtaatgaatgtttagattcggctttcggaggtttttcaagatgg |
47674247 |
T |
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| Q |
118 |
tgtatgaaaggttgtatgtatcttggtccaagttgttcatttagatatgaca |
169 |
Q |
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| T |
47674248 |
tgtatgaaaggttgtttatatcttggtccaagttgttctgttagatacgaca |
47674299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 47692767 - 47692825
Alignment:
| Q |
408 |
gagattttttaaatgaatcattgtgattgttagaagatgaaatgctacttaagaatgat |
466 |
Q |
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| T |
47692767 |
gagatttttaaaatgaatcattttgatgattaaaagatgaaatgctacttaagaatgat |
47692825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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