View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1688-Insertion-2 (Length: 518)
Name: NF1688-Insertion-2
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 401
Target Start/End: Original strand, 14705886 - 14706277
Alignment:
| Q |
11 |
atgtgcgtgtctgctagggtttttctcaacgtggcctcgtcgccaccaannnnnnncgaggaagttccttacctcagccaccacactgccaagaaaacca |
110 |
Q |
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| T |
14705886 |
atgtgcgtgtctgctagggtttttctcaacgtggcctcgtcgccaccaatttttttcgaggaagttccttacctcagccaccacactgccaagaaaacca |
14705985 |
T |
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| Q |
111 |
ccaacatggccacaacgatcacctgcacatgcccttgctaattttgatgatatcgctttttaatttaactaacaaaaccttccgtcaaaggggattcggt |
210 |
Q |
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| T |
14705986 |
ccaacatggccacaacgatcatctgcacatgcccttgctaattttgatgatatcgctttttaatttaactaacaaaaccttccgtcaaaggggattcagt |
14706085 |
T |
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| Q |
211 |
ttatcttaaaattatccgggaagttcatgatcatggtgtaacatcttt-nnnnnnnnnnncttacacgttcgattggttatgatcaaggtgtaacatatt |
309 |
Q |
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| T |
14706086 |
ttatcttaaaattacccgggaagttcatgatcatgatgtaacatctttaaaaaaaaaaaacttacacgttcgattggttatgatcaaggtgtaatatatt |
14706185 |
T |
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| Q |
310 |
aaaatgaaatgattgtggtcatcatggtttaattttgaatagatacacaaaattgtgttaccttttgaaaatttgaaacatatttgatttct |
401 |
Q |
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| T |
14706186 |
aaaatgaaatgattgtggtcatcatggtttaattttgaatagatacacaaaattgtgttacctttcgaaaatttgaaacatatttgatttct |
14706277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 14707077 - 14707142
Alignment:
| Q |
393 |
ttgatttcttggttgaaatatttatcttgtatataatgtattagtgacagatatttatctcatata |
458 |
Q |
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| T |
14707077 |
ttgattttttggttcaaatatttatcttgtatataatgtattactgacagatatttatctcatata |
14707142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 14707173 - 14707220
Alignment:
| Q |
471 |
tttgtcttgtacttctttgttatatttatcagttacgaatatatcctg |
518 |
Q |
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| T |
14707173 |
tttgttttgtacttctttgttatatttatcagttacgaatatatcctg |
14707220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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