View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1688-Insertion-4 (Length: 680)

Name: NF1688-Insertion-4
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1688-Insertion-4
NF1688-Insertion-4
[»] chr8 (5 HSPs)
chr8 (8-289)||(29269272-29269553)
chr8 (534-680)||(29265409-29265555)
chr8 (422-533)||(29266033-29266144)
chr8 (287-378)||(29268985-29269076)
chr8 (375-421)||(29268908-29268954)
[»] scaffold0349 (1 HSPs)
scaffold0349 (8-106)||(18257-18355)
[»] chr6 (6 HSPs)
chr6 (8-106)||(27713589-27713687)
chr6 (188-244)||(26641616-26641672)
chr6 (188-244)||(26747582-26747638)
chr6 (90-166)||(27651710-27651784)
chr6 (10-169)||(26815506-26815662)
chr6 (375-425)||(27649473-27649523)
[»] chr5 (1 HSPs)
chr5 (321-364)||(17088425-17088466)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 29269553 - 29269272
Alignment:
Q  8 caatgtatatggcatttgaaaccaagtttagccaaattctaaatggcaatttccacatcaaacaaaagaagaaaataaaaactccaaatgtatgtttgtt 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29269553 caatgtatatggcatttgataccaagtttagccaaattctaaatggcaatttccacatcaaacaaaagaagaaaatcaaaactccaaatgtatgtttgtt 29269454  T
Q  108 gcaatataactttttacagtttctttagggaaat--ttacttttataattatgggtgaagggttagtaagaacatgttagttaaaactcttatgtcatgc 205  Q
    |||  ||||||||  ||| ||| ||||||||||   | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29269453 gcaccataacttt--acattttatttagggaaaaaatgacttttataattatgggtgaagggttagtaagaacatgttagtcaaaactcttatgtcatgc 29269356  T
Q  206 aaaagagatttccttatggattggattgtcaatcactgctgttcatgttgtcacaacgtattatggtaatatgttgccttccaa 289  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||  |||||||    
T  29269355 aaaagagatttccttatggattggattgtcaatcacttttgttcatgttgtcacaacgtattatggtaatacgttagcttccaa 29269272  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 534 - 680
Target Start/End: Complemental strand, 29265555 - 29265409
Alignment:
Q  534 tccagcctccccatcgaaatatctgtcatcaacgacgaaatttcatagctactcaaccgggaaatcgtccaatcttcatcacacaatgacaatggcaatc 633  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29265555 tccagcctccccaccgaaatatctttcatcaacgtcgaaatttcatagctactcaaccgggaaatcatccaatcttcatcacacaatgacaatggcaatc 29265456  T
Q  634 gaaaccgacctccggagaaggccttacctccttcatacgtgattcta 680  Q
     ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  29265455 aaaatcgacctccggagaagtccttacctccttcatacgtgattcta 29265409  T

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Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 422 - 533
Target Start/End: Complemental strand, 29266144 - 29266033
Alignment:
Q  422 taagtagatggactagaaggtcatgttgaacccggctctgttaggctcattaccctcataaccgggtttcttctaattttcaaaatgaaccaaaatctag 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29266144 taagtagatggactagaaggtcatgttgaacccggctctgttaggctcattaccctcataaccgggtttcttctaattttcaaaatgaaccaaaatctag 29266045  T
Q  522 tggaacaaacga 533  Q
    ||||||||||||    
T  29266044 tggaacaaacga 29266033  T

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Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 29269076 - 29268985
Alignment:
Q  287 caaatttttgatccataatgttcatttacacttctttttatgtggaaataatggctcaaaggaatgcacttttagtcattggcttactgtaa 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29269076 caaatttttgatccataatgttcatttacacttctttttatgtggaaataatggctcaaaggaatgcacttttagtcattggcttactgtaa 29268985  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 29268954 - 29268908
Alignment:
Q  375 gtaaatttaatttattcacaatctgttcctgttattcacgattggaa 421  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  29268954 gtaaatttgatttattcacaatctgttcctgttattcacgattggaa 29268908  T

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Target: scaffold0349 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 18257 - 18355
Alignment:
Q  8 caatgtatatggcatttgaaaccaagtttagccaaattctaaatggcaatttccacatcaaacaaaagaagaaaataaaaactccaaatgtatgtttgt 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18257 caatgtatatggcatttgataccaagtttagccaaattctaaatggcaatttccacatcaaacaaaagaagaaaataaaaactccaaatgtatgtttgt 18355  T

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Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 27713687 - 27713589
Alignment:
Q  8 caatgtatatggcatttgaaaccaagtttagccaaattctaaatggcaatttccacatcaaacaaaagaagaaaataaaaactccaaatgtatgtttgt 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27713687 caatgtatatggcatttgataccaagtttagccaaattctaaatggcaatttccacatcaaacaaaagaagaaaataaaaactccaaatgtatgtttgt 27713589  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 26641616 - 26641672
Alignment:
Q  188 aaaactcttatgtcatgcaaaagagatttccttatggattggattgtcaatcactgc 244  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||    
T  26641616 aaaactcttatgtcttgcaaaagatatttccttatggatcggattgtctatcactgc 26641672  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 26747582 - 26747638
Alignment:
Q  188 aaaactcttatgtcatgcaaaagagatttccttatggattggattgtcaatcactgc 244  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||    
T  26747582 aaaactcttatgtcttgcaaaagatatttccttatggatcggattgtctatcactgc 26747638  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 27651784 - 27651710
Alignment:
Q  90 tccaaatgtatgtttgttgcaatataactttttacagtttctttagggaaatttacttttataattatgggtgaagg 166  Q
    ||||||||||||||||||||||| ||||  |||||||||||||| ||||| || |||||| |||| | |||||||||    
T  27651784 tccaaatgtatgtttgttgcaatgtaac--tttacagtttctttggggaatttgacttttttaataacgggtgaagg 27651710  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 26815506 - 26815662
Alignment:
Q  10 atgtatatggcatttgaaaccaagtttagccaaattctaaatggcaatttccacatcaaacaaaagaagaaaataaaaactccaaatgtatgtttgttgc 109  Q
    |||||| | |||||| ||||||| |||||||  | | |||| || | |||||||||| ||||||||| ||||| || | ||| |||||||||||||||||    
T  26815506 atgtatgtagcatttcaaaccaattttagcctcactttaaaaggtattttccacatcgaacaaaaga-gaaaaaaacagctctaaatgtatgtttgttgc 26815604  T
Q  110 aatataactttttacagtttctttagggaaatttacttttataattatgggtgaagggtt 169  Q
    ||   |||   ||| ||||| ||| |||||| |||||||||||||| |||| ||||||||    
T  26815605 aaagcaac--attatagtttatttggggaaacttacttttataattctgggagaagggtt 26815662  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 27649523 - 27649473
Alignment:
Q  375 gtaaatttaatttattcacaatctgttcctgttattcacgattggaataag 425  Q
    ||||||||  |||||||| |||||||||||||||||||| ||| |||||||    
T  27649523 gtaaatttgctttattcataatctgttcctgttattcacaattagaataag 27649473  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 364
Target Start/End: Original strand, 17088425 - 17088466
Alignment:
Q  321 tttttatgtggaaataatggctcaaaggaatgcacttttagtca 364  Q
    ||||||||||||||||||||||||||| |  |||||||||||||    
T  17088425 tttttatgtggaaataatggctcaaagca--gcacttttagtca 17088466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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