View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1688-Insertion-5 (Length: 885)

Name: NF1688-Insertion-5
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1688-Insertion-5
NF1688-Insertion-5
[»] chr6 (8 HSPs)
chr6 (142-885)||(9337761-9338498)
chr6 (375-499)||(20403280-20403403)
chr6 (142-241)||(17379683-17379783)
chr6 (8-71)||(9337626-9337689)
chr6 (393-499)||(10747148-10747253)
chr6 (8-75)||(17379850-17379917)
chr6 (303-377)||(24454426-24454497)
chr6 (287-356)||(10747309-10747377)
[»] chr7 (27 HSPs)
chr7 (142-493)||(10939698-10940070)
chr7 (142-499)||(30238415-30238796)
chr7 (171-499)||(30252842-30253196)
chr7 (142-367)||(11352063-11352287)
chr7 (375-499)||(13390909-13391032)
chr7 (412-499)||(11352645-11352732)
chr7 (497-617)||(11353526-11353643)
chr7 (375-499)||(5223695-5223818)
chr7 (375-499)||(10877832-10877955)
chr7 (375-491)||(14971196-14971311)
chr7 (375-491)||(15400672-15400787)
chr7 (375-499)||(8280960-8281083)
chr7 (704-782)||(11354537-11354615)
chr7 (8-77)||(10940135-10940204)
chr7 (393-499)||(9132329-9132434)
chr7 (305-377)||(8281102-8281174)
chr7 (292-377)||(13391630-13391716)
chr7 (272-373)||(10877709-10877809)
chr7 (8-63)||(11351943-11351998)
chr7 (521-566)||(5224489-5224534)
chr7 (394-499)||(16223128-16223231)
chr7 (8-77)||(30252678-30252747)
chr7 (303-377)||(10203374-10203445)
chr7 (204-359)||(9132120-9132274)
chr7 (375-416)||(11352316-11352357)
chr7 (145-256)||(13391744-13391856)
chr7 (788-823)||(11354597-11354632)
[»] chr5 (22 HSPs)
chr5 (142-495)||(18958440-18958813)
chr5 (178-499)||(19527239-19527582)
chr5 (142-499)||(25916716-25917094)
chr5 (168-499)||(20972248-20972599)
chr5 (375-499)||(24660795-24660918)
chr5 (375-494)||(24511065-24511184)
chr5 (272-499)||(25087028-25087272)
chr5 (272-499)||(25144997-25145241)
chr5 (393-499)||(23987316-23987422)
chr5 (179-377)||(24660937-24661136)
chr5 (9-77)||(18958879-18958947)
chr5 (14-74)||(20972694-20972754)
chr5 (204-256)||(23987243-23987295)
chr5 (386-501)||(24670338-24670452)
chr5 (386-501)||(24707113-24707227)
chr5 (386-501)||(24740107-24740221)
chr5 (386-501)||(24752876-24752990)
chr5 (383-498)||(22847236-22847350)
chr5 (275-367)||(16739369-16739459)
chr5 (375-410)||(27735844-27735879)
chr5 (303-377)||(29831082-29831153)
chr5 (8-77)||(25916582-25916651)
[»] chr3 (19 HSPs)
chr3 (142-499)||(24507825-24508196)
chr3 (142-330)||(16976402-16976590)
chr3 (171-499)||(1343265-1343614)
chr3 (150-499)||(25922040-25922405)
chr3 (375-499)||(24697808-24697932)
chr3 (375-499)||(16974050-16974174)
chr3 (638-741)||(24506973-24507076)
chr3 (8-77)||(16976654-16976723)
chr3 (14-77)||(24508261-24508324)
chr3 (203-377)||(42368739-42368908)
chr3 (375-499)||(42368927-42369049)
chr3 (404-499)||(20246153-20246245)
chr3 (383-492)||(4831140-4831248)
chr3 (8-77)||(1343101-1343170)
chr3 (8-77)||(25922477-25922546)
chr3 (336-372)||(16974195-16974231)
chr3 (209-359)||(20246311-20246458)
chr3 (15-61)||(42368550-42368596)
chr3 (393-454)||(13607191-13607251)
[»] chr2 (10 HSPs)
chr2 (142-499)||(26023450-26023828)
chr2 (375-499)||(29841825-29841949)
chr2 (375-497)||(17335488-17335609)
chr2 (204-376)||(25906543-25906713)
chr2 (142-377)||(17335230-17335469)
chr2 (393-499)||(25906750-25906855)
chr2 (390-499)||(39667112-39667220)
chr2 (19-77)||(26023894-26023952)
chr2 (306-367)||(24373994-24374054)
chr2 (142-234)||(39667385-39667477)
[»] chr4 (8 HSPs)
chr4 (178-499)||(15782877-15783218)
chr4 (142-358)||(11554025-11554242)
chr4 (379-495)||(11554278-11554393)
chr4 (375-491)||(15699312-15699427)
chr4 (142-359)||(5984869-5985076)
chr4 (8-78)||(11553892-11553962)
chr4 (383-450)||(5985120-5985186)
chr4 (142-256)||(15699055-15699169)
[»] chr1 (10 HSPs)
chr1 (142-499)||(18934652-18935030)
chr1 (376-499)||(25221107-25221229)
chr1 (181-377)||(22507137-22507346)
chr1 (409-498)||(22045579-22045667)
chr1 (394-499)||(21982854-21982960)
chr1 (305-377)||(17199684-17199753)
chr1 (292-372)||(25221254-25221335)
chr1 (303-377)||(17317211-17317282)
chr1 (432-498)||(17317356-17317422)
chr1 (386-499)||(19957326-19957441)
[»] scaffold0411 (1 HSPs)
scaffold0411 (375-479)||(12819-12922)
[»] chr8 (5 HSPs)
chr8 (377-499)||(17125274-17125395)
chr8 (375-461)||(16598902-16598987)
chr8 (271-377)||(17125148-17125253)
chr8 (386-499)||(19303785-19303898)
chr8 (292-367)||(19303931-19304005)
[»] scaffold0767 (2 HSPs)
scaffold0767 (204-361)||(1796-1950)
scaffold0767 (430-499)||(2038-2108)
[»] scaffold0711 (3 HSPs)
scaffold0711 (384-499)||(4228-4342)
scaffold0711 (292-377)||(4369-4453)
scaffold0711 (142-256)||(4458-4573)
[»] scaffold0577 (1 HSPs)
scaffold0577 (388-495)||(593-699)
[»] scaffold0103 (1 HSPs)
scaffold0103 (433-498)||(35188-35253)


Alignment Details
Target: chr6 (Bit Score: 630; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 142 - 885
Target Start/End: Original strand, 9337761 - 9338498
Alignment:
Q  142 caatgtatatacaattgatgaattactaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaa 241  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9337761 caatgtatatgtaattgatgaattgctaagaattggaactaattgatccaagtaaaatgttgaaaacctaattcaaggaattaggccaattttaaccaaa 9337860  T
Q  242 aagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacaccg 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9337861 aagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacaccg 9337960  T
Q  342 agatttttatagtagttcaccctttcgtcctcgcttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgatt 441  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9337961 agatttttatagtagtttaccctttcgtcgtcgcttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgatt 9338060  T
Q  442 acacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaagtgaatcaattaaaagtatcttgaaatgattcacacaaagtc 541  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  9338061 acacgagttcccttaaactatcctagttcttcaaccccaatgtaaccactcccccaaagtgaatcaattaaaagtatcataaaatgattcacacaaagtc 9338160  T
Q  542 agagactttgtgtggtacgattcaagcaataatagtgaatcg-attcagaggtgcagaaaatgaattttgacattatgaatgaattttacttggactata 640  Q
    |||||||||||||||||||||||||||   |||||||||||| |||  ||    ||||||||||||||| |||||||||||||||||||||||| |||||    
T  9338161 agagactttgtgtggtacgattcaagc---aatagtgaatcgaattttga----cagaaaatgaattttaacattatgaatgaattttacttgggctata 9338253  T
Q  641 agctaaccaggacacaaggaatcacacagtactaagagacgcatattacttgggtgctttaacataatctaagctaaactaataaaggaataaaatgcta 740  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9338254 agctaaccaggacacaaggaatcacacagtactaagagacgcatattacttgggtgctttaacataatctaagctaaactaataaaggaataaaatgcta 9338353  T
Q  741 agtaaaacccaccagtcatttgaacatcatcaaaacaacctaagattacatcatcaaaataatctatgtcaaggcaggcttcacgcgggaccgagcgtgg 840  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||      
T  9338354 agtaaaacccaccagtcatttgaacatcatcaaaacaacctaagattacatcatcaaaataatctatgtcaaggcaggcttcacgcagaaccgagcgtat 9338453  T
Q  841 cgagcatcaacccctgaagagatgaatatagtcgaactcgatgtt 885  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  9338454 cgagcatcaacccctgaagagatgattatagtcgaactcgatgtt 9338498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 20403403 - 20403280
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||||||||| | ||||||| |||| |||  |||||||||||    
T  20403403 cttggtgaaaaacgcctccaccaaggtcatccactaatagtaacaatgttgaa-cacaaatgtgattaaaagagttccatgaagctaaactagttcttca 20403305  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    ||||| |||||| |||||| |||||    
T  20403304 acccctatgtaaacactcctccaaa 20403280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 17379783 - 17379683
Alignment:
Q  142 caatgtatatacaattgatgaatta-ctaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaa 240  Q
    |||||||||| |||||||||| ||  |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  17379783 caatgtatatgcaattgatgatttggctaagaattgaaactaattgatccaagtgaaatagtgaaaacctaattcaaggaattaagccaattttaaccaa 17379684  T
Q  241 a 241  Q
    |    
T  17379683 a 17379683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 9337626 - 9337689
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9337626 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaa 9337689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 393 - 499
Target Start/End: Complemental strand, 10747253 - 10747148
Alignment:
Q  393 caccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactc 492  Q
    |||||||| | ||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||| ||  ||| |||||||||||| |||||| |||||    
T  10747253 caccaaggtcatccactaatagtaacaatgttgaat-acaaatgtgtttacaagagttccttgaaattaaactaattcttcaacccctatgtaaacactc 10747155  T
Q  493 ccccaaa 499  Q
    |||||||    
T  10747154 ccccaaa 10747148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 17379917 - 17379850
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaat 75  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  17379917 tacaagagaattgagagatttacaagctaaatcttatttcaaccaattattaataatacttgaacaat 17379850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 24454426 - 24454497
Alignment:
Q  303 atcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    |||||||||||| ||||||  ||||||| |  |||||||||||||  ||||||||||||||||||||| ||||||    
T  24454426 atcaaaattaaagaggatagagaagagagag-aacaccgagattt--atagtagttcaccctttcgtcttcgctt 24454497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 10747377 - 10747309
Alignment:
Q  287 ttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtag 356  Q
    |||| ||||| |||| ||||||| |||| |||||| |||||||| | ||||||||| |||||||||||||    
T  10747377 ttaatcatatgcaataatcaaaagtaaagaggatatggaagagaga-taacaccgatatttttatagtag 10747309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 142 - 493
Target Start/End: Complemental strand, 10940070 - 10939698
Alignment:
Q  142 caatgtatatacaattgatgaatta-ctaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaa 240  Q
    |||||||||| |||||||||||||  ||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  10940070 caatgtatatgcaattgatgaattggctaggaattgaaactaattgatccaagtgaaatagtgaaaacctaattcaaggaattaggccaattttaaccaa 10939971  T
Q  241 aaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacacc 340  Q
    ||||||||||||||||||||||||| |||  |||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||    
T  10939970 aaagaacttagatcaaaatcaatttatattatatcagctaatcaatttaagcatatacaattatcaaaattaaagaggataaggaagagagaacgacacc 10939871  T
Q  341 gagatttttatagtagttcaccctttcgtcctcg--------------------cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaa 420  Q
    || |||||||||||||||| |||||| ||||| |                    ||||||||||||| | |||||||||||||||||||||||||| |||    
T  10939870 gaaatttttatagtagttcgcccttttgtccttgttttgggatgctctactcttcttggtgaaaaacacatccaccaaggacttccactaatagtaacaa 10939771  T
Q  421 tgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcc 493  Q
    |||||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  10939770 tgttgaattacaaatgtaattacaaaagttccttgaaactatcctagttcttcaacccctatgtaaccactcc 10939698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 142 - 499
Target Start/End: Original strand, 30238415 - 30238796
Alignment:
Q  142 caatgtatatacaattgatgaattactaag-aattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaa 240  Q
    ||||||| || |||||||||||||  | || ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  30238415 caatgtacatgcaattgatgaattggttaggaattgaaactaattgatccaagtaaaatagtgaaaacctaattcaaggaattagaccaattttaaccaa 30238514  T
Q  241 aaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataagg----aagagaaaataa 336  Q
    ||| |||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||||| |||| |||||||||    || | ||||  |    
T  30238515 aaaaaacttagatcaaaatcaatttctattctattaattaatcaatttaaacatatacaattatcaaaactaaagaggataagggaaaaaaaaaaaacta 30238614  T
Q  337 caccgagatttttatagtagttcaccctttcgtcctcg---------------------cttggtgaaaaacgcctccaccaaggacttccactaatagt 415  Q
    ||||||||||||||||||||||| ||||||| || |||                     |||||||||||||| |||||||||||||||||| |||||||    
T  30238615 caccgagatttttatagtagttcgccctttcatcatcgcttcgggttacatctactcttcttggtgaaaaacgtctccaccaaggacttccagtaatagt 30238714  T
Q  416 agcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    |   ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  30238715 aaagatgttgaattacaaatgtgattacaagagttccttgaaactatcctagttcttcaaccc--atgtaaccacttccccaaa 30238796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 171 - 499
Target Start/End: Original strand, 30252842 - 30253196
Alignment:
Q  171 gaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaaaa-gaacttagatcaaaatcaa------t 263  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||      |    
T  30252842 gaattgaaactaattgatccaagtaaaatagtgaaaacctaattcaaggaattagaccaattttaaccaaaaaagaacttagatcaaaatcaaaatcaat 30252941  T
Q  264 ttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccc 363  Q
    ||||||  ||| ||||||||||||||| |||||||||||||||||| |||| || ||||||   | ||||  |||||||||||||||||||||||| |||    
T  30252942 ttctattctattaattaatcaatttaaacatatacaattatcaaaactaaagagcataaggggaaaaaaactacaccgagatttttatagtagttcgccc 30253041  T
Q  364 tttcgtcctcgctt---------------------ggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgatta 442  Q
    ||||||| ||||||                     |||||||||||  ||||||||||||||||| ||||||||   ||||||||| |||||||||||||    
T  30253042 tttcgtcatcgcttcgggttacatctactcttcttggtgaaaaacgtatccaccaaggacttccagtaatagtaaagatgttgaattacaaatgtgatta 30253141  T
Q  443 cacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    || |||||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  30253142 caagagttccttgaaactatcctagttcttcaaccc--atgtaaccacttccccaaa 30253196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 142 - 367
Target Start/End: Original strand, 11352063 - 11352287
Alignment:
Q  142 caatgtatatacaattgatgaattactaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaa 241  Q
    ||||||| ||| |||||||||||| |||||||||| ||  ||||||| ||||| |||| ||||||||||||||||||||||||||| || ||||||||||    
T  11352063 caatgtaaatataattgatgaattgctaagaattgaaatcaattgatgcaagtgaaatagtgaaaacctaattcaaggaattaggctaaatttaaccaaa 11352162  T
Q  242 aagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacaccg 341  Q
    ||||||||| | ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||     
T  11352163 aagaactta-agcaaaatcaatttctatcctatgaattaatcaattcaagcatatacaattatcaaaattaaagaggataaggaagagaaaacgacacca 11352261  T
Q  342 agatttttatagtagttcaccctttc 367  Q
    | ||||||||||||||||| ||||||    
T  11352262 atatttttatagtagttcatcctttc 11352287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 13391032 - 13390909
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||||| ||||||||||| | ||||||| ||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||    
T  13391032 cttggtgaaaaacgactccaccaaggtcatccactagtagtaacaatgttgaat-acaaatgtgattacaagagttccttggaactatcctagttcttca 13390934  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    ||||| |||||| ||||||||||||    
T  13390933 acccctatgtaagcactcccccaaa 13390909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 412 - 499
Target Start/End: Original strand, 11352645 - 11352732
Alignment:
Q  412 tagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||| ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11352645 tagtaacaatgttgaattacaaatatgattacaagagttccttgaaactatcctagttcttcaacccctatgtaaccactcccccaaa 11352732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 497 - 617
Target Start/End: Original strand, 11353526 - 11353643
Alignment:
Q  497 aaagtgaatcaattaaaagtatcttgaaatgattcacacaaagtcagagactttgtgtggtacgattcaagcaataatagtgaatcgattcagaggtgca 596  Q
    |||||||||| ||| ||| |||| ||||| |||||||||||||||||| |||||| ||| ||||||||||||   ||||||||||||||||| || ||||    
T  11353526 aaagtgaatcgattcaaaatatcatgaaacgattcacacaaagtcagaaactttgagtgatacgattcaagc---aatagtgaatcgattcatagttgca 11353622  T
Q  597 gaaaatgaattttgacattat 617  Q
    |||||||||||||||||||||    
T  11353623 gaaaatgaattttgacattat 11353643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 5223695 - 5223818
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||||| ||| ||||||| | ||||||||||||| ||||||||||  ||||||||||||||| |||||||||| ||| |||||| |||||||    
T  5223695 cttggtgaaaaacgtctctaccaaggtcatccactaatagtaacaatgttgaaa-acaaatgtgattacaagagttccttggaacaatcctacttcttca 5223793  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    ||||| ||||||  |||||||||||    
T  5223794 acccctatgtaagaactcccccaaa 5223818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 10877832 - 10877955
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||| | ||||||||||| | ||||||||||||| ||||||||||| ||||| || |||||| |||||||||||||||||| ||||||||||    
T  10877832 cttggtgaaaaatgtctccaccaaggtcatccactaatagtaacaatgttgaat-acaaaagtaattacaagagttccttgaaactatcttagttcttca 10877930  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    ||||| |  ||| ||||||||||||    
T  10877931 acccctacataagcactcccccaaa 10877955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 375 - 491
Target Start/End: Original strand, 14971196 - 14971311
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||||||||||||||||| | ||||| |||||||  |||||||||| |||||||| |||| | |||||||||||||||||||||||||||||    
T  14971196 cttggtgaaaaacgcctccaccaaggtcatccacaaatagtaataatgttgaat-acaaatgtaattagaagagttccttgaaactatcctagttcttca 14971294  T
Q  475 accccaatgtaaccact 491  Q
    || || |||||| ||||    
T  14971295 actcctatgtaagcact 14971311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 375 - 491
Target Start/End: Original strand, 15400672 - 15400787
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||||||||||||||||| | ||||| |||||||  |||||||||| |||||||| |||| | |||||||||||||||||||||||||||||    
T  15400672 cttggtgaaaaacgcctccaccaaggtcatccacaaatagtaataatgttgaat-acaaatgtaattagaagagttccttgaaactatcctagttcttca 15400770  T
Q  475 accccaatgtaaccact 491  Q
    || || |||||| ||||    
T  15400771 actcctatgtaagcact 15400787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 8281083 - 8280960
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||||| ||||||||||| | ||||||||||||| |||| |||||| |||||||||| || | |||||||||| |||  |||||||||||||    
T  8281083 cttggtgaaaaacgtctccaccaaggtcatccactaatagtaacaatattgaat-acaaatgtgactaaaagagttccttggaacggtcctagttcttca 8280985  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    ||||| |||||| ||||||| ||||    
T  8280984 acccctatgtaaacactcccgcaaa 8280960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 704 - 782
Target Start/End: Original strand, 11354537 - 11354615
Alignment:
Q  704 ataatctaagctaaactaataaaggaataaaatgctaagtaaaacccaccagtcatttgaacatcatcaaaacaaccta 782  Q
    |||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  11354537 ataatctaagcccaactaataaaggaataacatgctaagtaaaacccatcagtcatttgaacatcatcaaaataaccta 11354615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 10940204 - 10940135
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  10940204 tacaagagaattgagagtttcacaagctaaatcttatttcaatcaattactaataatacttgaacaattt 10940135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 499
Target Start/End: Original strand, 9132329 - 9132434
Alignment:
Q  393 caccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactc 492  Q
    |||||||| | ||||| ||||||| ||||||||||| ||||||||| ||||| ||||||||||||| ||  ||| |||||||||||  |||||| |||||    
T  9132329 caccaaggtcatccacaaatagtaacaatgttgaat-acaaatgtgtttacaagagttccttgaaattaaactaattcttcaacccttatgtaaacactc 9132427  T
Q  493 ccccaaa 499  Q
    |||||||    
T  9132428 ccccaaa 9132434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 8281174 - 8281102
Alignment:
Q  305 caaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    |||||||||| ||||||||||| ||| ||  ||||||| ||||||||||| ||||||||||||||||||||||    
T  8281174 caaaattaaagaggataaggaaaagagaacgacaccgatatttttatagttgttcaccctttcgtcctcgctt 8281102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 292 - 377
Target Start/End: Complemental strand, 13391716 - 13391630
Alignment:
Q  292 catatacaattatca-aaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    |||||||||||| || |||||||| |||||||| || ||| ||  ||||||| ||||||||||| ||||||||||||||||||||||    
T  13391716 catatacaattaacagaaattaaagaggataagtaaaagagaacgacaccgatatttttatagttgttcaccctttcgtcctcgctt 13391630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 272 - 373
Target Start/End: Original strand, 10877709 - 10877809
Alignment:
Q  272 tatcaattaatcaatttaagcatatacaattatca-aaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtc 370  Q
    |||||||||||||||| |  ||||||| |||| |  |||||||| ||||||||||| ||| || | |||||| ||||||||||| |||||||||||||||    
T  10877709 tatcaattaatcaattaa--catatactattaacggaaattaaagaggataaggaaaagagaacatcaccgatatttttatagttgttcaccctttcgtc 10877806  T
Q  371 ctc 373  Q
    |||    
T  10877807 ctc 10877809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 11351943 - 11351998
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataa 63  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  11351943 tacaaaagaattgagagattcactagttaaatcttatttcaatcaattattaataa 11351998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 521 - 566
Target Start/End: Original strand, 5224489 - 5224534
Alignment:
Q  521 tgaaatgattcacacaaagtcagagactttgtgtggtacgattcaa 566  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||    
T  5224489 tgaaacgattcacacaaagtcagaaactttgtgtggtacgattcaa 5224534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 499
Target Start/End: Original strand, 16223128 - 16223231
Alignment:
Q  394 accaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcc 493  Q
    ||||||| | ||||||||||||| | ||||||||| |||| |||| ||||| ||||||||||||| ||  ||| |||||||||||| ||| || ||||||    
T  16223128 accaaggtcatccactaatagtaactatgttgaat-acaa-tgtgtttacaagagttccttgaaattaaactaattcttcaacccctatgcaaacactcc 16223225  T
Q  494 cccaaa 499  Q
    ||||||    
T  16223226 cccaaa 16223231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 30252678 - 30252747
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    |||||| |||||||| |||||||||||| ||| ||||||||||||| ||||| || ||||| ||||||||    
T  30252678 tacaagggaattgagtgattcacaagctgaatcttatttcaatcaaatattactagtacttgaacaattt 30252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 10203374 - 10203445
Alignment:
Q  303 atcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    |||||| ||||| |||||||||||||||||  | |||||||||||  ||||||||||| ||||||||||||||||    
T  10203374 atcaaagttaaagaggataaggaagagaaacga-caccgagattt--atagtagttcaacctttcgtcctcgctt 10203445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 359
Target Start/End: Original strand, 9132120 - 9132274
Alignment:
Q  204 aaaacctaattcaaggaattaggccaa-ttttaaccaaaaag-aacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaat 301  Q
    |||||||||||||| |||||||| ||| ||||||| |||||  |||||||||||| |  | |||||| | || |  ||| |||||| |  ||||| ||||    
T  9132120 aaaacctaattcaatgaattaggtcaacttttaacaaaaaaacaacttagatcaatacaagtttctaacctaaccgttattcaattaa--catatgcaat 9132217  T
Q  302 tatcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttc 359  Q
     ||||||| |||| | ||||||||||||| | ||||||||| ||||||||||||||||    
T  9132218 aatcaaaaataaagaagataaggaagagaga-taacaccgatatttttatagtagttc 9132274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 11352316 - 11352357
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagta 416  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  11352316 cttggtgaaaaacgcctccacgaaggatttccactaatagta 11352357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 13391856 - 13391744
Alignment:
Q  145 tgtatatacaattgatgaattactaag-aattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaaaa 243  Q
    ||||||| |||||||||||||   ||| ||||| |||||||||||||||||| |||    ||||||||||||||  ||||||  ||||||| | ||||||    
T  13391856 tgtatatgcaattgatgaattgtaaaggaattgaaactaattgatccaagtacaatataaaaaacctaattcaaataattagatcaatttttatcaaaaa 13391757  T
Q  244 gaacttagatcaa 256  Q
      |||||||||||    
T  13391756 ttacttagatcaa 13391744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 823
Target Start/End: Original strand, 11354597 - 11354632
Alignment:
Q  788 acatcatcaaaataatctatgtcaaggcaggcttca 823  Q
    ||||||||||||||| ||||||||||||||||||||    
T  11354597 acatcatcaaaataacctatgtcaaggcaggcttca 11354632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 142 - 495
Target Start/End: Complemental strand, 18958813 - 18958440
Alignment:
Q  142 caatgtatatacaattgatgaattactaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaa 241  Q
    |||||||||| |||||||| ||||  | ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||||||    
T  18958813 caatgtatatgcaattgataaattgtttagaattgaaactaattgatccaagtataatagtgaaaacctaattcaaggaattatgccaattt-aaccaaa 18958715  T
Q  242 aagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacaccg 341  Q
    | | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  |||||     
T  18958714 acgtacttggatcaaaatcaatttctatcctatcaattaatcaatttaagcatatacaattatcaaaattaaagaggataaggaagatataaagacacct 18958615  T
Q  342 agatttttatagtagttcaccctttcgtcctc---------------------gcttggtgaaaaacgcctccaccaaggacttccactaatagtagcaa 420  Q
    |||||||||||||| ||| | |||||||||||                      |||||||||||||||||||||||||||||| |||||||||||||||    
T  18958614 agatttttatagtatttctctctttcgtcctcacttcgagctacgtctacttttcttggtgaaaaacgcctccaccaaggacttacactaatagtagcaa 18958515  T
Q  421 tgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccc 495  Q
     ||||||| |||||| |||||||| |||||||||||||||||| ||||||| ||||||| ||||||| |||||||    
T  18958514 agttgaattacaaatatgattacaagagttccttgaaactatcgtagttctccaacccccatgtaactactcccc 18958440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 178 - 499
Target Start/End: Complemental strand, 19527582 - 19527239
Alignment:
Q  178 aactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattt---taaccaaaaagaacttagatcaaaatcaatttctatcttat 274  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||   |||  ||||| ||||||||||||||||||||| |||  |||    
T  19527582 aactaattgatccaagtaaaatagtgaaaacctaattcaaagaattaggccaattttaataaaaaaaaacaacttagatcaaaatcaatttatattctat 19527483  T
Q  275 caattaatcaatttaagcatatacaattatcaaaattaaaaaggataa-ggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctc 373  Q
    ||||||| ||| |||| ||||||||||||||||||||||  ||||||| |||| ||| |||  |||  |||||||||||||||||||||||||||| |||    
T  19527482 caattaaacaa-ttaaacatatacaattatcaaaattaaggaggataagggaaaagagaatggcacaaagatttttatagtagttcaccctttcgttctc 19527384  T
Q  374 g---------------------cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttcc 452  Q
    |                     |||||||||||||||||||| ||||||||||||  ||||||| ||||||||||| ||||||||||||||  |||||||    
T  19527383 gcttcgggctacgcctactcttcttggtgaaaaacgcctccatcaaggacttccatcaatagtaacaatgttgaat-acaaatgtgattacgagagttcc 19527285  T
Q  453 ttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||    
T  19527284 ttgaaactatcctagttcttcaa-cgctatgtaaccactcccccaaa 19527239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 142 - 499
Target Start/End: Original strand, 25916716 - 25917094
Alignment:
Q  142 caatgtatatacaattgatgaattac-taagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaa 240  Q
    ||||| |||| |||||||||||||   || |||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||| ||  ||    
T  25916716 caatgcatatgcaattgatgaattggataggaattgaaactaattgatccaagtaaaatagtgaaaacctaattcaagaaattaggtcaatttaaaaaaa 25916815  T
Q  241 aaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataa-ggaagagaaaataacac 339  Q
    ||| ||||||||||||||| |||||||||  ||||||||||||||  ||| ||||||||| ||||||||||||| ||||||| |||| ||| ||  ||||    
T  25916816 aaacaacttagatcaaaattaatttctattctatcaattaatcaa-ctaaacatatacaactatcaaaattaaagaggataagggaaaagagaacgacac 25916914  T
Q  340 cgagatttttatagtagttcaccctttcgtcctc---------------------gcttggtgaaaaacgcctccaccaaggacttccactaatagtagc 418  Q
    | ||||||| ||||||||||||||||||||||||                      |||||||||||||||||||||||||| | ||||||||||||| |    
T  25916915 caagattttaatagtagttcaccctttcgtcctcacttcgggctacgtctactcttcttggtgaaaaacgcctccaccaaggtcatccactaatagtaac 25917014  T
Q  419 aatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||| ||||||  ||||||||||| || |||||||| |||||||||||||||||| |||||  |||||| |||| |||||||    
T  25917015 aatattgaat-gcaaatgtgatttcaagagttcctcgaaactatcctagttctttaacccatatgtaagcacttccccaaa 25917094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 168 - 499
Target Start/End: Complemental strand, 20972599 - 20972248
Alignment:
Q  168 taagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaaaagaacttagatcaaaatcaatttct 267  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||| |||| |||| || | |||| | ||||||||| ||||| |||||||    
T  20972599 taagaattgaaactaattgatccaagcaaaatggggaaaacctaattcaacgaactaggtcaatattgaacaaagataacttagatgaaaataaatttct 20972500  T
Q  268 atcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataa-ggaagagaaaataacaccgagatttttatagtagttcacccttt 366  Q
    ||  |||||||| | ||| |||| |||||||||  |||||||||||| ||||||| |||| ||| || ||||||||||||||||||||||||||||||||    
T  20972499 atactatcaatttaacaa-ttaaacatatacaacaatcaaaattaaacaggataagggaaaagagaacaacaccgagatttttatagtagttcacccttt 20972401  T
Q  367 cgtcctcg---------------------cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacac 445  Q
     |||||||                     ||||||||||||  |||||||||||| | |||||| ||| || ||||||||||| | |||||||||||||     
T  20972400 tgtcctcgcttcaggctacgtctactcttcttggtgaaaaaaacctccaccaaggtcatccactgataataacaatgttgaat-aaaaatgtgattacaa 20972302  T
Q  446 gagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||||||| |||||||| ||||||||||||||| ||||||  |||||| ||||    
T  20972301 gagttccttaaaactatcttagttcttcaacccctatgtaagtactccctcaaa 20972248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 24660918 - 24660795
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    ||||||||||||||| ||||||||||   |||||||||||||  |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  24660918 cttggtgaaaaacgcatccaccaaggttatccactaatagtaataatgttgaat-acaaatgtgattacaagagttccttgaaactatcctagttcttca 24660820  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    || || |||||| ||||||||||||    
T  24660819 actcctatgtaagcactcccccaaa 24660795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 375 - 494
Target Start/End: Original strand, 24511065 - 24511184
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||| |||||||| | |  | ||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  24511065 cttggtgaaaaatgcctccacaacgatcatccactaatagtaacaatgttgaataacaaatgtgattacaagagttcctttaaactatcctagttcttca 24511164  T
Q  475 accccaatgtaaccactccc 494  Q
    ||||| ||||||||||||||    
T  24511165 acccctatgtaaccactccc 24511184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 272 - 499
Target Start/End: Original strand, 25087028 - 25087272
Alignment:
Q  272 tatcaattaatcaatttaagcatatacaatta-tcaaaattaaaaaggataaggaag----agaaaataacaccgagatttttatagtagttcacccttt 366  Q
    |||||||||||||||| |  |||||||||||| | |||||||||||||||||||||     ||| ||| ||||||| ||||||||||| |||||||||||    
T  25087028 tatcaattaatcaattga--catatacaattaatgaaaattaaaaaggataaggaaattaaagagaatgacaccgatatttttatagttgttcacccttt 25087125  T
Q  367 cgtcctcgcttgg---------------tgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttc 451  Q
    ||||||| ||| |               | ||||| ||||||||||||| | ||||||||||||| ||||||||| | ||||||||||||||| ||||||    
T  25087126 cgtcctcactttggtctacgtcaactcttcaaaaatgcctccaccaaggtcatccactaatagtaacaatgttgatt-acaaatgtgattacaagagttc 25087224  T
Q  452 cttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    |||| ||  ||||||||||||||||||| |||||| ||||||||||||    
T  25087225 cttggaaaaatcctagttcttcaacccctatgtaagcactcccccaaa 25087272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 272 - 499
Target Start/End: Original strand, 25144997 - 25145241
Alignment:
Q  272 tatcaattaatcaatttaagcatatacaatta-tcaaaattaaaaaggataaggaag----agaaaataacaccgagatttttatagtagttcacccttt 366  Q
    |||||||||||||||| |  |||||||||||| | |||||||||||||||||||||     ||| ||| ||||||| ||||||||||| |||||||||||    
T  25144997 tatcaattaatcaattga--catatacaattaatgaaaattaaaaaggataaggaaattaaagagaatgacaccgatatttttatagttgttcacccttt 25145094  T
Q  367 cgtcctcgcttgg---------------tgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttc 451  Q
    ||||||| ||| |               | ||||| ||||||||||||| | ||||||||||||| ||||||||| | ||||||||||||||| ||||||    
T  25145095 cgtcctcactttggtctacgtcaactcttcaaaaatgcctccaccaaggtcatccactaatagtaacaatgttgatt-acaaatgtgattacaagagttc 25145193  T
Q  452 cttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    |||| ||  ||||||||||||||||||| |||||| ||||||||||||    
T  25145194 cttggaaaaatcctagttcttcaacccctatgtaagcactcccccaaa 25145241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 393 - 499
Target Start/End: Original strand, 23987316 - 23987422
Alignment:
Q  393 caccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaact-atcctagttcttcaaccccaatgtaaccact 491  Q
    |||||||| | |||||||||||||  |||||||||  ||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||| ||||    
T  23987316 caccaaggtcatccactaatagtaaaaatgttgaaa-acaaatgtgattacaagagttccttgaaactaattctagttcttcaacccctatgtaaacact 23987414  T
Q  492 cccccaaa 499  Q
    ||||||||    
T  23987415 cccccaaa 23987422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 377
Target Start/End: Complemental strand, 24661136 - 24660937
Alignment:
Q  179 actaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaaaagaacttagatcaa---aatcaatttctatcttatc 275  Q
    ||||||| ||||||||  ||| || ||||||||| ||||||| ||||  |||||||| | |||||| |||||||||||   ||  || ||| |   ||||    
T  24661136 actaattaatccaagttcaatagtaaaaacctaactcaaggagttagatcaattttatc-aaaaagtacttagatcaattaaaaaaaattcaacactatc 24661038  T
Q  276 aattaatcaatttaagcatatacaattatca-aaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcg 374  Q
    |||||||||||| |  |||||||||||| |  |||||||| ||||||||||| ||| ||  ||||| | ||||||||||| |||||| ||||||||||||    
T  24661037 aattaatcaattga--catatacaattaacggaaattaaagaggataaggaaaagagaacgacaccaatatttttatagttgttcactctttcgtcctcg 24660940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 18958947 - 18958879
Alignment:
Q  9 acaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    ||||| |||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| || |||||    
T  18958947 acaagcgaattgagtgattcagaagctaaatcttatttcaatcaaatattaataatacttgaagaattt 18958879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 20972754 - 20972694
Alignment:
Q  14 agaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaa 74  Q
    |||||||||||||||| ||| ||||| ||||| |||||||||||||||||| ||| |||||    
T  20972754 agaattgagagattcataagataaatcttattacaatcaattattaataattcttgaacaa 20972694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 23987243 - 23987295
Alignment:
Q  204 aaaacctaattcaaggaattaggccaattttaaccaaaaagaacttagatcaa 256  Q
    ||||||||||||||||||||||   |||||||| |||||||||||||||||||    
T  23987243 aaaacctaattcaaggaattagattaattttaatcaaaaagaacttagatcaa 23987295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 501
Target Start/End: Complemental strand, 24670452 - 24670338
Alignment:
Q  386 acgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaact-atcctagttcttcaaccccaatgt 484  Q
    |||||| | |||||| ||||||||||||||| ||||||||||| || |||||| ||||| ||||||||||||| | | |||| |||||||||||| ||      
T  24670452 acgccttctccaaggtcttccactaatagtaacaatgttgaat-ac-aatgtgtttacaagagttccttgaaattaaacctaattcttcaacccctattc 24670355  T
Q  485 aaccactcccccaaagt 501  Q
    || || |||||||||||    
T  24670354 aaacattcccccaaagt 24670338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 501
Target Start/End: Complemental strand, 24707227 - 24707113
Alignment:
Q  386 acgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaact-atcctagttcttcaaccccaatgt 484  Q
    |||||| | |||||| ||||||||||||||| ||||||||||| || |||||| ||||| ||||||||||||| | | |||| |||||||||||| ||      
T  24707227 acgccttctccaaggtcttccactaatagtaacaatgttgaat-ac-aatgtgtttacaagagttccttgaaattaaacctaattcttcaacccctattc 24707130  T
Q  485 aaccactcccccaaagt 501  Q
    || || |||||||||||    
T  24707129 aaacattcccccaaagt 24707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 501
Target Start/End: Complemental strand, 24740221 - 24740107
Alignment:
Q  386 acgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaact-atcctagttcttcaaccccaatgt 484  Q
    |||||| | |||||| ||||||||||||||| ||||||||||| || |||||| ||||| ||||||||||||| | | |||| |||||||||||| ||      
T  24740221 acgccttctccaaggtcttccactaatagtaacaatgttgaat-ac-aatgtgtttacaagagttccttgaaattaaacctaattcttcaacccctattc 24740124  T
Q  485 aaccactcccccaaagt 501  Q
    || || |||||||||||    
T  24740123 aaacattcccccaaagt 24740107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 501
Target Start/End: Complemental strand, 24752990 - 24752876
Alignment:
Q  386 acgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaact-atcctagttcttcaaccccaatgt 484  Q
    |||||| | |||||| ||||||||||||||| ||||||||||| || |||||| ||||| ||||||||||||| | | |||| |||||||||||| ||      
T  24752990 acgccttctccaaggtcttccactaatagtaacaatgttgaat-ac-aatgtgtttacaagagttccttgaaattaaacctaattcttcaacccctattc 24752893  T
Q  485 aaccactcccccaaagt 501  Q
    || || |||||||||||    
T  24752892 aaacattcccccaaagt 24752876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 498
Target Start/End: Complemental strand, 22847350 - 22847236
Alignment:
Q  383 aaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaat 482  Q
    ||||||||||||||||||||||||||||  |     ||||||  || ||||| ||||||||| || ||||||||||||| |||| ||||||||  |||||    
T  22847350 aaaacgcctccaccaaggacttccactagaatattgaatgtttgattacaaa-gtgattacaagaattccttgaaactaccctaattcttcaattccaat 22847252  T
Q  483 gtaaccactcccccaa 498  Q
    | || |||||||||||    
T  22847251 gcaatcactcccccaa 22847236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 16739369 - 16739459
Alignment:
Q  275 caattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttc 367  Q
    |||||| ||||||||  ||||| |||| || |||| |||| |||||| |||||||| | ||||||||| |||||||||||||||||| |||||    
T  16739369 caattattcaatttat-catatgcaataatgaaaagtaaagaggatagggaagagaga-taacaccgatatttttatagtagttcactctttc 16739459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 410
Target Start/End: Original strand, 27735844 - 27735879
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccacta 410  Q
    |||| |||||||||||||||||||||||||||||||    
T  27735844 cttgatgaaaaacgcctccaccaaggacttccacta 27735879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 29831082 - 29831153
Alignment:
Q  303 atcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    |||||||||||| |||||| |||||||||||  | | |||||  ||||||||||||||||||||| |||||||||    
T  29831082 atcaaaattaaagaggatagggaagagaaaa-gatatcgaga--tttatagtagttcaccctttcttcctcgctt 29831153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 25916582 - 25916651
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    ||||| ||||||||||||||| | |  ||||| ||||| ||||||| |||||||||| ||| ||||||||    
T  25916582 tacaatagaattgagagattccctaaataaatcttattacaatcaaatattaataattcttgaacaattt 25916651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 6e-89; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 142 - 499
Target Start/End: Complemental strand, 24508196 - 24507825
Alignment:
Q  142 caatgtatatacaattgatgaattactaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaa 241  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||||| |||| || ||||| ||| || |||||||||||||||||||||||||    
T  24508196 caatgtatatgcaattgatgaattgctgagaattgaaactaattgatccaagtgaaatagtaaaaacataactcgaggaattaggccaattttaaccaaa 24508097  T
Q  242 aa-gaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacacc 340  Q
    || ||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||| ||||||||||| | | || ||||||    
T  24508096 aaggaacttagatcaaaatcaatttctatcct--------atcaatttaagcatatacaattatcaaaattaaagaggataaggaaaatagaacaacacc 24508005  T
Q  341 gagatttttatagtagttcaccctttcgtcctcg---------------------cttggtgaaaaacgcctccaccaaggacttccactaatagtagca 419  Q
    ||||||||||||||||||| ||||||||||||||                     |||| |||||||| | |||||||||||||||||||||||||| ||    
T  24508004 gagatttttatagtagttcgccctttcgtcctcgtttcgggctacgtctacacttcttgatgaaaaacacttccaccaaggacttccactaatagtaaca 24507905  T
Q  420 atgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||    
T  24507904 atgttgaattacaaatgtgattacaagagttccttaaaactatcctggttcttcaacccctatgtaaccactccctcaaa 24507825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 142 - 330
Target Start/End: Complemental strand, 16976590 - 16976402
Alignment:
Q  142 caatgtatatacaattgatgaattactaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaa 241  Q
    |||||||||| ||||||||||||| |||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||| ||| |||    
T  16976590 caatgtatatgcaattgatgaattgctaacaattgaaactaattgatccaagtgaaatagtgaaaacctaattcaagaaattaggtcaatttgaacaaaa 16976491  T
Q  242 aagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagaga 330  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||  |||||||    
T  16976490 aagaacttagatcaaaatcaatttctattttatcaattaataaatttaagcatatgcaattatcaaaattaaagaggatatagaagaga 16976402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 171 - 499
Target Start/End: Original strand, 1343265 - 1343614
Alignment:
Q  171 gaattggaactaattgatccaagtaaaatg-gtgaaaacctaattcaaggaattaggccaattttaaccaaaaagaacttagatcaaaatcaatttctat 269  Q
    |||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |    
T  1343265 gaattgaaactaattgatccaagtaaaaacagtgaaaacctaattcaaggaattaggccaattttaatcaaaaacaacttagatcaaaatcaatttcttt 1343364  T
Q  270 cttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataag-gaagagaaaataacaccgagatttttatagtagttcaccctttcg 368  Q
      | |||||  ||||| |||| ||||||||| ||||||||||||| ||||||||  || ||| ||  |||  ||||||||||||||||||| | |||| |    
T  1343365 tctgtcaatatatcaa-ttaaacatatacaactatcaaaattaaagaggataagaaaaaagagaaagacattgagatttttatagtagttcgctcttttg 1343463  T
Q  369 tcctcg---------------------cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacga 447  Q
    ||||||                     ||||||||||||| |||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||| ||    
T  1343464 tcctcgctttgagccacatctactcttcttggtgaaaaacacctccaccaaggacttccactaatggtaacaatcttgaat-acaaatgtgattacaaga 1343562  T
Q  448 gttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||||| |||||||| ||||||||||||  | |||||| ||||||| ||||    
T  1343563 gttccttaaaactatcttagttcttcaacttctatgtaaacactcccacaaa 1343614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 150 - 499
Target Start/End: Complemental strand, 25922405 - 25922040
Alignment:
Q  150 atacaattgatgaatt-actaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaaaagaac- 247  Q
    ||||||||||||| || | || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  ||||| ||      
T  25922405 atacaattgatgatttgattaggaattgaaactaattgatccaagtaaaatagtgaaaacctaattcaaggaattagaccaattttaataaaaaaaaaac 25922306  T
Q  248 ---ttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataagg-aagagaaaataacaccgag 343  Q
       ||| |||||||||||||| |||  ||||||||||         ||| |||||||||||||||||||| ||||||||| || ||| ||   |||||||    
T  25922305 aagttatatcaaaatcaatttatattctatcaattaa---------gcacatacaattatcaaaattaaagaggataagggaaaagagaacggcaccgag 25922215  T
Q  344 atttttatagtagttcaccctttcgtcctcgctt---------------------ggtgaaaaacgcctccaccaaggacttccactaatagtagcaatg 422  Q
    ||||| |||| |||||||||||| ||||||||||                     |||| |||||||||||||||||||||||||||||||||| |||||    
T  25922214 atttt-atagcagttcacccttttgtcctcgcttcgggctacgtctactcttcttggtgtaaaacgcctccaccaaggacttccactaatagtaacaatg 25922116  T
Q  423 ttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||  |||||||||| ||||    
T  25922115 ttgaat-acaaatgtgattacaagagttccttgaaactattctagttcttcaacccctataaaaccactccctcaaa 25922040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 24697808 - 24697932
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||    
T  24697808 cttggtgaaaaacgtctccaccaaggacttccactaatagtaacaatgttgaattacaaatgtgattacaagagttccttgaaactaccctagttcttca 24697907  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    ||||| |||||||||||||||||||    
T  24697908 acccctatgtaaccactcccccaaa 24697932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 16974174 - 16974050
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||| ||||| ||| |||||||||||||||||||  |||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||    
T  16974174 cttggtgaaaaatgcctcgaccgaggacttccactaatagtaataatgttgaattacaaatgtgattacaagagttcctttaaactatcatagttcttca 16974075  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    |||||| ||||||||||||||||||    
T  16974074 accccattgtaaccactcccccaaa 16974050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 638 - 741
Target Start/End: Complemental strand, 24507076 - 24506973
Alignment:
Q  638 ataagctaaccaggacacaaggaatcacacagtactaagagacgcatattacttgggtgctttaacataatctaagctaaactaataaaggaataaaatg 737  Q
    |||||||||| || ||||||||||||||||| ||| |||| || ||| || |||||||||||||||||||||||||||||||||  ||||||| || |||    
T  24507076 ataagctaactagaacacaaggaatcacacaatacaaagatacacatgttgcttgggtgctttaacataatctaagctaaactatcaaaggaacaacatg 24506977  T
Q  738 ctaa 741  Q
    ||||    
T  24506976 ctaa 24506973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 16976723 - 16976654
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  16976723 tacaagaaaattgagagattcacaagcaaaatcttatttcaatcaattattaataatacttgaacaattt 16976654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 24508324 - 24508261
Alignment:
Q  14 agaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  24508324 agaattgagagattcataagctaaatcttatttcaatcaattattaataatacttgaacaattt 24508261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 203 - 377
Target Start/End: Original strand, 42368739 - 42368908
Alignment:
Q  203 gaaaacctaattcaaggaattaggccaattttaaccaaaaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaatt 302  Q
    |||||||||||||||||||||| | ||| |||||| |||  || ||  ||||| | |||||||||||   |||||||||||||||  | |||||||||||    
T  42368739 gaaaacctaattcaaggaattaagtcaagtttaacaaaattgatctc-gatcacattcaatttctattccatcaattaatcaattata-catatacaatt 42368836  T
Q  303 atcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    |||||||||||| |||||||||||||| |||  | ||  |||  |||||||||||||||||||| ||||||||||    
T  42368837 atcaaaattaaagaggataaggaagag-aaacgatacaaaga--tttatagtagttcacccttttgtcctcgctt 42368908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 42368927 - 42369049
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    ||||||| ||||| ||||| |||||||||| |||||| | ||  |||||||||| |||| |||||||||| |||||||||||| ||| ||||||||||||    
T  42368927 cttggtggaaaactcctccgccaaggactttcactaaaa-tatgaatgttgaattacaa-tgtgattacaagagttccttgaagctaccctagttcttca 42369024  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    ||||  || ||| ||||||||||||    
T  42369025 acccttatataaacactcccccaaa 42369049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 404 - 499
Target Start/End: Complemental strand, 20246245 - 20246153
Alignment:
Q  404 tccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaact-atcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||||| ||||| ||| ||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||   ||||| ||||||||||||    
T  20246245 tccactagtagtaacaaagttgaat-ataaatgtgattacaagagttccttgaaactaatcctagttcttcaaccc---tgtaaacactcccccaaa 20246153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 383 - 492
Target Start/End: Original strand, 4831140 - 4831248
Alignment:
Q  383 aaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaat 482  Q
    ||||| |||||  ||||| | |||||||||||||  |||||||||| ||||||||||||||| |||||| |||||||||   |||||||||||| || ||    
T  4831140 aaaactcctcccacaaggtcatccactaatagtaaaaatgttgaat-acaaatgtgattacaagagttcgttgaaactaaaatagttcttcaacgcctat 4831238  T
Q  483 gtaaccactc 492  Q
    |||| |||||    
T  4831239 gtaaacactc 4831248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 1343101 - 1343170
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    ||||| ||||||||| |||| ||||| ||||| ||||||||||||| |||||||  ||||| ||||||||    
T  1343101 tacaatagaattgagtgatttacaagataaatcttatttcaatcaaatattaatggtacttgaacaattt 1343170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 25922546 - 25922477
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    ||||| ||||||||| |||||||||||||||| |||||| ||| |  |||||||| ||||| ||||||||    
T  25922546 tacaatagaattgagtgattcacaagctaaatcttatttaaataatatattaatagtacttgaacaattt 25922477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 16974231 - 16974195
Alignment:
Q  336 acaccgagatttttatagtagttcaccctttcgtcct 372  Q
    ||||||||||||||||| |||||||||||||||||||    
T  16974231 acaccgagatttttatattagttcaccctttcgtcct 16974195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 359
Target Start/End: Complemental strand, 20246458 - 20246311
Alignment:
Q  209 ctaattcaaggaattaggccaattttaaccaaaaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaa 308  Q
    |||||||||||||||||   |||||| | |||||  |||||||||||| |  | ||| |||| || ||||||||||| |  ||||||| |||  ||||||    
T  20246458 ctaattcaaggaattagattaattttgatcaaaagcaacttagatcaacacaagtttttatcctaacaattaatcaact--agcatatgcaaaaatcaaa 20246361  T
Q  309 attaaaaaggataaggaagagaaaataacaccgagatttttatagtagttc 359  Q
    | |||| | ||||||||| || | || ||||||| ||||||||||||||||    
T  20246360 agtaaagaagataaggaaaag-agatgacaccgatatttttatagtagttc 20246311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 42368550 - 42368596
Alignment:
Q  15 gaattgagagattcacaagctaaatattatttcaatcaattattaat 61  Q
    ||||||||||||||| ||||||||| ||||| ||||||| |||||||    
T  42368550 gaattgagagattcaaaagctaaatcttattccaatcaaatattaat 42368596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 13607191 - 13607251
Alignment:
Q  393 caccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttcctt 454  Q
    |||||||| | |||||||||||||  |||||||||| ||||||||| ||||| |||||||||    
T  13607191 caccaaggtcatccactaatagtaataatgttgaat-acaaatgtgtttacaagagttcctt 13607251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 2e-70; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 142 - 499
Target Start/End: Complemental strand, 26023828 - 26023450
Alignment:
Q  142 caatgtatatacaattgatgaattactaa-gaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaatttt---aac 237  Q
    |||||||||| |||||||||||||  | | |||||| |||||||||||| |||||||||  |||||||||||||||||||||||||||||||||    |     
T  26023828 caatgtatatgcaattgatgaattggttatgaattgaaactaattgatctaagtaaaataatgaaaacctaattcaaggaattaggccaatttttaataa 26023729  T
Q  238 caaaaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataagg-aagagaaaataa 336  Q
     ||||| ||||||||||||||||||||||||   |||||||||||||||| |   | |||||||||||||||||||| | ||||||| || ||| ||  |    
T  26023728 aaaaaacaacttagatcaaaatcaatttctaaactatcaattaatcaattaa---acatacaattatcaaaattaaaga-gataaggaaaaagagaacga 26023633  T
Q  337 caccgagatttttatagtagttcaccctttcgtcctcg---------------------cttggtgaaaaacgcctccaccaaggacttccactaatagt 415  Q
    |||||||||||||||||||||||| |||||||||||||                     ||||||||||||| |||||||||||||||||||||||||||    
T  26023632 caccgagatttttatagtagttcatcctttcgtcctcgcttcgggctatgtctactcttcttggtgaaaaacacctccaccaaggacttccactaatagt 26023533  T
Q  416 agcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    | |||||| |||| |||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  26023532 aacaatgtcgaat-acaaatgtgattgcaagagttccttgaaactatcctagttcgtcaacccctatgtaaccactcccccaaa 26023450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 29841825 - 29841949
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| | ||| ||||||||| ||||| ||||||||||||| |||||||||||||||    
T  29841825 cttggtggaaaacgcctcctccaaggacttccactaatagtaacaatggtaaattacaaatgtgtttacaagagttccttgaaaatatcctagttcttca 29841924  T
Q  475 accccaatgtaaccactcccccaaa 499  Q
    ||||| || ||| ||||||||||||    
T  29841925 acccctatataaacactcccccaaa 29841949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 375 - 497
Target Start/End: Original strand, 17335488 - 17335609
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    ||||||||||||| |||||||||| | | |||||||| |||| ||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||    
T  17335488 cttggtgaaaaacacctccaccaatgtcatccactaacagtaacaatgttgaat-acaaatgtgattacaagagtttcttgaaattatcctagttcttca 17335586  T
Q  475 accccaatgtaaccactccccca 497  Q
    ||  | |||||| ||||||||||    
T  17335587 acttctatgtaagcactccccca 17335609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 25906543 - 25906713
Alignment:
Q  204 aaaacctaattcaaggaattaggccaattttaaccaaaaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaatta 303  Q
    |||||||||||||| ||||||||  |||||| | | |||| |||||||||||| |  | ||||||||  | |||||| ||||||  | ||||| |||| |    
T  25906543 aaaacctaattcaatgaattaggttaatttttaacgaaaacaacttagatcaatacaagtttctatccgaacaattattcaatt--aacatatgcaataa 25906640  T
Q  304 tcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcacccttt-cgtcctcgct 376  Q
    || ||| |||| |||||||||||||| | |||||||||| |||||||||||||||| | |||| ||||||||||    
T  25906641 tcgaaagtaaagaggataaggaagag-agataacaccgatatttttatagtagttcgctctttacgtcctcgct 25906713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 142 - 377
Target Start/End: Original strand, 17335230 - 17335469
Alignment:
Q  142 caatgtatatacaattgatgaattac-taagaattggaactaattgatccaagtaaaatggtgaaaaccta----attcaaggaattaggccaattttaa 236  Q
    |||||||||| |||||||||||||   || |||||| ||||||| ||||||| || ||| || ||||||||    ||||||||||||||  ||| ||| |    
T  17335230 caatgtatatgcaattgatgaattggataggaattgaaactaatcgatccaaatacaatagtaaaaacctagctaattcaaggaattagatcaaatttta 17335329  T
Q  237 ccaaaaagaacttagatcaaa-atcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaata 335  Q
      | |||  |||||| ||||  || ||||||||   |||||||| ||||||| |  |||||||||||| ||||| | |||  ||||||||| ||| ||      
T  17335330 tgagaaactacttagttcaattattaatttctactctatcaatttatcaattaa--catatacaattaacaaaaatcaaagagataaggaaaagagaacg 17335427  T
Q  336 acaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  17335428 acaccgatacttttatagtagttcaccctttcgtcctcgctt 17335469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 393 - 499
Target Start/End: Original strand, 25906750 - 25906855
Alignment:
Q  393 caccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactc 492  Q
    |||||||| | ||||||||||||| ||||||||||| ||||||||| ||||| |||||| |||||| ||  ||| |||||||||||| |||| | || ||    
T  25906750 caccaaggtcatccactaatagtaacaatgttgaat-acaaatgtgtttacaagagttcgttgaaattaaactaattcttcaacccctatgtgaacattc 25906848  T
Q  493 ccccaaa 499  Q
    |||||||    
T  25906849 ccccaaa 25906855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 499
Target Start/End: Complemental strand, 39667220 - 39667112
Alignment:
Q  390 ctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaacca 489  Q
    ||||||||||| | |  ||||| |||| ||||||||||| ||||||||||||||| ||| |||||||||||| ||| |||||||| | |  || ||||||    
T  39667220 ctccaccaaggtcatatactaacagtaacaatgttgaat-acaaatgtgattacaagagatccttgaaactaccctggttcttcacctcatatctaacca 39667122  T
Q  490 ctcccccaaa 499  Q
    ||||||||||    
T  39667121 ctcccccaaa 39667112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 26023952 - 26023894
Alignment:
Q  19 tgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaattt 77  Q
    |||| |||||| ||||||||| ||||||||||||| |||||||| ||||| ||||||||    
T  26023952 tgagtgattcaaaagctaaatcttatttcaatcaaatattaatagtacttgaacaattt 26023894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 24374054 - 24373994
Alignment:
Q  306 aaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttc 367  Q
    |||| |||| |||||| |||||||| | ||||||||| |||||||||||||||||| |||||    
T  24374054 aaaagtaaagaggatagggaagagaga-taacaccgatatttttatagtagttcactctttc 24373994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 39667477 - 39667385
Alignment:
Q  142 caatgtatatacaattgatgaattac-taagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaatttt 234  Q
    |||||||||| ||||| |||||||   || |||||| |||||||||||||||| | |||||| ||||||||| ||||||| ||||  |||||||    
T  39667477 caatgtatatgcaatttatgaattgtataggaattgaaactaattgatccaagcacaatggt-aaaacctaactcaaggagttagatcaatttt 39667385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 1e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 178 - 499
Target Start/End: Complemental strand, 15783218 - 15782877
Alignment:
Q  178 aactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaa-ccaaaaagaacttagatcaaaatcaatttctatcttatca 276  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| | |||||||||| | ||||| |||||||||||||||||||||||||  |||||    
T  15783218 aactaattgatccaagtaaaatagtgaaaacctaaatcaaggaattggaccaattttaatcaaaaaacaacttagatcaaaatcaatttctattctatca 15783119  T
Q  277 attaatcaatttaagcatatacaattatcaaaattaaaaaggataa-ggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcg- 374  Q
    ||||||||| |||  | ||||||| ||||||||||||| ||||||| |||| ||| ||  |||||||||||||||||||||||| | ||||||||||||     
T  15783118 attaatcaa-ttagacttatacaactatcaaaattaaagaggataagggaaaagagaaagacaccgagatttttatagtagttcgctctttcgtcctcgc 15783020  T
Q  375 --------------------cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttcctt 454  Q
                        ||||||| ||||| |||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||| |||||||||    
T  15783019 ttcgagctacatctactcttcttggtg-aaaacacctccaccaaggacttccactattagtaacaatgtttaat-acaaatgtgattacaagagttcctt 15782922  T
Q  455 gaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||    
T  15782921 gaaactatcctagttcttcaacccctatgtaagcactcccccaaa 15782877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 142 - 358
Target Start/End: Original strand, 11554025 - 11554242
Alignment:
Q  142 caatgtatatacaattgatgaatt-actaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaa 240  Q
    |||||||||| |||| | | |||| |||||| || | ||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| |    
T  11554025 caatgtatatgcaatgggttaattgactaaggatcgaaactaattgatccaagtgaaatagtgaaaacctaattcaaggtattaggccaattttaaccga 11554124  T
Q  241 aaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataacacc 340  Q
    ||||||| ||||| ||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  11554125 aaagaacatagataaaaatcaatttatatccgatcaattaatcaattcaagcatatacaattatcaaaattaaagaggataaggaagagaagacaacacc 11554224  T
Q  341 gagatttttatagtagtt 358  Q
    ||| ||||||||||||||    
T  11554225 gaggtttttatagtagtt 11554242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 379 - 495
Target Start/End: Original strand, 11554278 - 11554393
Alignment:
Q  379 gtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccc 478  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||| ||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  11554278 gtgaaaaacgcatccaccaaggatttccactaat-gtaacaatgttgaattacagatgtgattacaagagttccttaaaactaccctggttcttcaaccc 11554376  T
Q  479 caatgtaaccactcccc 495  Q
    | |||||||||||||||    
T  11554377 ctatgtaaccactcccc 11554393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 375 - 491
Target Start/End: Original strand, 15699312 - 15699427
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    |||||||||||||| ||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||    
T  15699312 cttggtgaaaaacgtctccaccaaggtcatccactaatagtaacaatgttgaat-acaaatgtgattacaagagttccttggaacaatcctagttcttca 15699410  T
Q  475 accccaatgtaaccact 491  Q
    || || |||||| ||||    
T  15699411 actcctatgtaagcact 15699427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 142 - 359
Target Start/End: Original strand, 5984869 - 5985076
Alignment:
Q  142 caatgtatatacaattgatgaattactaagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaa 241  Q
    |||||||||| |||||||||||||  | || | | ||| ||||||||||||||||||| |||||||||||||||            ||||||||| ||||    
T  5984869 caatgtatatgcaattgatgaattggttaggaattgaaataattgatccaagtaaaatagtgaaaacctaattcct----------caattttaatcaaa 5984958  T
Q  242 aagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataa-ggaagagaaaataacacc 340  Q
    || ||||||||| |||||||||||||||  |||||||| ||||| |||| ||||||||| ||| ||||||||| ||||||| |||| ||| ||  |||||    
T  5984959 aacaacttagattaaaatcaatttctattctatcaattcatcaa-ttaaacatatacaactattaaaattaaagaggataagggaaaagagaaagacacc 5985057  T
Q  341 gagatttttatagtagttc 359  Q
    |||||||||||||||||||    
T  5985058 gagatttttatagtagttc 5985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 11553892 - 11553962
Alignment:
Q  8 tacaagagaattgagagattcacaagctaaatattatttcaatcaattattaataatacttaaacaatttt 78  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  11553892 tacaagagaattgagagattcacaagctaaatcttatttcaatcaattattaataaaatttaaacaatttt 11553962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 450
Target Start/End: Original strand, 5985120 - 5985186
Alignment:
Q  383 aaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagtt 450  Q
    |||| ||||||| ||| ||||||||||  ||||| ||||||||||| ||||||||||||||| |||||    
T  5985120 aaaatgcctccatcaacgacttccactgttagtaacaatgttgaat-acaaatgtgattacaagagtt 5985186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 15699055 - 15699169
Alignment:
Q  142 caatgtatatacaattgatgaattac-taagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaa 240  Q
    |||||||||| |||||||| ||||   || |||||| |||||||||||||||||| ||| || ||||||||| |||| || ||||  ||||||| | |||    
T  15699055 caatgtatatgcaattgataaattgtataggaattgaaactaattgatccaagtacaatagt-aaaacctaactcaacgagttagatcaatttttatcaa 15699153  T
Q  241 aaagaacttagatcaa 256  Q
    |||  |||||||||||    
T  15699154 aaatcacttagatcaa 15699169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 9e-54; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 142 - 499
Target Start/End: Original strand, 18934652 - 18935030
Alignment:
Q  142 caatgtatatacaattgatgaattactaag-aattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaa 240  Q
    ||||| |||| ||||||||||||||   || ||||| |||||||||||||||| ||||| || |||||| |||| ||| |||||   ||||||| | |||    
T  18934652 caatgcatatgcaattgatgaattagatagtaattgaaactaattgatccaagcaaaatagtaaaaaccaaatttaagaaattaaatcaatttttatcaa 18934751  T
Q  241 aaagaactta--gatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataaggaagagaaaataaca 338  Q
    ||| ||||||  |||||| || ||||||||   |||||||||||||||| |  ||||||||| ||||||||||||| ||||||||||| ||| ||| |||    
T  18934752 aaacaacttatagatcaatattaatttctactctatcaattaatcaattaa--catatacaactatcaaaattaaagaggataaggaaaagagaatgaca 18934849  T
Q  339 ccgagatttttatagtagttcaccctttcgtcctcgctt---------------------ggtgaaaaacgcctccaccaaggacttccactaatagtag 417  Q
    || | |||||||||||||||||||||||| ||| |||||                     ||||||||||||||||| ||||| | |||||||||||||     
T  18934850 ccaatatttttatagtagttcaccctttcatccccgcttcgggctacgtctactgttcttggtgaaaaacgcctccagcaaggtcatccactaatagtaa 18934949  T
Q  418 caatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  18934950 caatgttgaat-agaaatgtgattacaagagttccttgaaactatcctacttcttcaacccccatgtaagcactcccccaaa 18935030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 376 - 499
Target Start/End: Complemental strand, 25221229 - 25221107
Alignment:
Q  376 ttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaa 475  Q
    ||||||||||||||||||||||||| | |||| ||||||||  |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  25221229 ttggtgaaaaacgcctccaccaaggtcatccattaatagtaataatgttgaat-acaaatgtgattacaagagttcctttaaactatcctagttcttcaa 25221131  T
Q  476 ccccaatgtaaccactcccccaaa 499  Q
    | || ||||||  |||||||||||    
T  25221130 ctcctatgtaaggactcccccaaa 25221107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 181 - 377
Target Start/End: Original strand, 22507137 - 22507346
Alignment:
Q  181 taattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaaa-------------aagaacttagatcaaaatcaatttct 267  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |  |||             || |||||| ||||||||||||||||    
T  22507137 taattgatccaagcaaaatagtgaaaacctaattaaaggaattaggccaattttgataaaataaaaaaaaaataaaaaacttatatcaaaatcaatttct 22507236  T
Q  268 atcttatcaattaatcaatttaagcatatacaattatcaaaattaaaaaggataagg-aagagaaaataacaccgagatttttatagtagttcacccttt 366  Q
    ||  |||||||| ||||||| || ||||||||| ||||||| || || ||||||||| || ||| ||  |||||||||||||||| ||||||||||||||    
T  22507237 attctatcaatttatcaattaaa-catatacaactatcaaacttgaagaggataagggaaaagagaacgacaccgagatttttattgtagttcacccttt 22507335  T
Q  367 cgtcctcgctt 377  Q
    |||||||||||    
T  22507336 cgtcctcgctt 22507346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 409 - 498
Target Start/End: Complemental strand, 22045667 - 22045579
Alignment:
Q  409 taatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaa 498  Q
    |||||||| ||||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||||||| |||||| |||||||||||    
T  22045667 taatagtaacaatgttgaat-acaaatgtgattactagagttccttaaaactatcctagttcttcaacccctatgtaaacactcccccaa 22045579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 394 - 499
Target Start/End: Complemental strand, 21982960 - 21982854
Alignment:
Q  394 accaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagt--tcttcaaccccaatgtaaccact 491  Q
    ||||||| | ||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||| ||  ||| |  |||| |||||| |||||| ||||    
T  21982960 accaaggtcatccactaatagtaacaatgttgaat-acaaatgtgtttacaagagttccttgaaattaaactaattctctttaacccctatgtaaacact 21982862  T
Q  492 cccccaaa 499  Q
    ||||||||    
T  21982861 cccccaaa 21982854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 17199684 - 17199753
Alignment:
Q  305 caaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    |||||||||| || |||  ||||||| || |||||||||||||  ||||||||||||||||||||||||||||    
T  17199684 caaaattaaagagaatagagaagagagaa-aacaccgagattt--atagtagttcaccctttcgtcctcgctt 17199753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 25221335 - 25221254
Alignment:
Q  292 catatacaattatc-aaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcct 372  Q
    |||||||||||| | ||||||||| ||||||||||| ||| || || ||||  ||||||||||| |||||| ||||||||||    
T  25221335 catatacaattaacgaaaattaaagaggataaggaaaagagaacaataccgttatttttatagttgttcactctttcgtcct 25221254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 377
Target Start/End: Original strand, 17317211 - 17317282
Alignment:
Q  303 atcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    |||||||||||| ||||||  ||||||| || | |||||||||||  |||||||||| |||||||||||||||||    
T  17317211 atcaaaattaaagaggatagagaagagagaaga-caccgagattt--atagtagttcgccctttcgtcctcgctt 17317282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 432 - 498
Target Start/End: Original strand, 17317356 - 17317422
Alignment:
Q  432 aaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaa 498  Q
    ||||||| ||||| || ||||||||||||| |||||||||||||  || ||| || |||||||||||    
T  17317356 aaatgtgtttacaagaattccttgaaactaccctagttcttcaattcctatgcaatcactcccccaa 17317422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 499
Target Start/End: Original strand, 19957326 - 19957441
Alignment:
Q  386 acgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgt--gattacacgagttccttgaaactatc-ctagttcttcaaccccaat 482  Q
    |||||| || ||||| | ||||||||||||| | ||||||||| ||||||||  | ||||| ||||||||||||| ||   ||| |||||||||||| ||    
T  19957326 acgccttcatcaaggtcatccactaatagtaaccatgttgaat-acaaatgtatgtttacaagagttccttgaaattaaaactaattcttcaacccctat 19957424  T
Q  483 gtaaccactcccccaaa 499  Q
    | || ||||||||||||    
T  19957425 gcaaacactcccccaaa 19957441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 375 - 479
Target Start/End: Original strand, 12819 - 12922
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttca 474  Q
    ||||||||||||||||||||| |||| | |||  |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||    
T  12819 cttggtgaaaaacgcctccacgaaggtcatccgataatagtaacaatgttgaat-acaaatgtgattacaagagttccttgaaactaaactagttcttca 12917  T
Q  475 acccc 479  Q
    |||||    
T  12918 acccc 12922  T

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Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 377 - 499
Target Start/End: Original strand, 17125274 - 17125395
Alignment:
Q  377 tggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaac 476  Q
    |||||||||||||||||| ||||| | ||||||| ||||| || |||||||| ||||||||||||||| |||||  ||  ||| ||||||||||||||||    
T  17125274 tggtgaaaaacgcctccatcaaggtcatccactagtagtaacactgttgaat-acaaatgtgattacaagagtttttttgaacaatcctagttcttcaac 17125372  T
Q  477 cccaatgtaaccactcccccaaa 499  Q
    ||| |||||| ||||||||||||    
T  17125373 ccctatgtaagcactcccccaaa 17125395  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 461
Target Start/End: Complemental strand, 16598987 - 16598902
Alignment:
Q  375 cttggtgaaaaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaacta 461  Q
    ||||||||||||  |||||||||||| | ||||||| ||||| |||||||| || ||||||||||||||| ||||||||||||||||    
T  16598987 cttggtgaaaaatacctccaccaaggtcatccactagtagtaacaatgttgcat-acaaatgtgattacaagagttccttgaaacta 16598902  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 17125148 - 17125253
Alignment:
Q  271 ttatcaattaatcaatttaagcatatacaattatca-aaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgt 369  Q
    ||||||||||||||||| |  |||||||||||| |  |||||||| ||||||||||| ||| ||  ||||||| ||||||| ||| ||||||||||||||    
T  17125148 ttatcaattaatcaattaa--catatacaattaacggaaattaaagaggataaggaaaagagaacgacaccgacatttttaaagttgttcaccctttcgt 17125245  T
Q  370 cctcgctt 377  Q
    ||||||||    
T  17125246 cctcgctt 17125253  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 386 - 499
Target Start/End: Complemental strand, 19303898 - 19303785
Alignment:
Q  386 acgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaact-atcctagttcttcaaccccaatgt 484  Q
    |||||| |||||| | | ||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||| | |  ||| |||||||||||| |||     
T  19303898 acgccttcaccaaagtcatccactaatagtaacaatgttgaat-acaaatgtgtttacaagagttccttgaaattaaaactaattcttcaacccctatgc 19303800  T
Q  485 aaccactcccccaaa 499  Q
    || ||||||||||||    
T  19303799 aaacactcccccaaa 19303785  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 19304005 - 19303931
Alignment:
Q  292 catatacaattatcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttc 367  Q
    ||||| |||| || |||| |||| |||||| |||||||| | ||||||||| |||||||||||||||||| |||||    
T  19304005 catatgcaataatgaaaagtaaagaggatagggaagagaga-taacaccgatatttttatagtagttcactctttc 19303931  T

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Target: scaffold0767 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 204 - 361
Target Start/End: Original strand, 1796 - 1950
Alignment:
Q  204 aaaacctaattcaaggaattaggccaattttaaccaaaaagaacttagatcaaaatcaatttctatcttatcaattaatcaatttaagcatatacaatta 303  Q
    ||||||||||||||||||||||   |||||| | |||||  |||||||||||| |  | |||||||| ||  ||||||||||||  ||||||| |||| |    
T  1796 aaaacctaattcaaggaattagcttaattttcatcaaaagcaacttagatcaacacaagtttctatcctaataattaatcaatt--agcatatgcaataa 1893  T
Q  304 tcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcac 361  Q
    |||||| |||| |||||||||||||| | ||||| |||| ||||||||||||||||||    
T  1894 tcaaaagtaaagaggataaggaagag-agataactccgatatttttatagtagttcac 1950  T

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Target: scaffold0767; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 499
Target Start/End: Original strand, 2038 - 2108
Alignment:
Q  430 acaaatgtgattacacgagttccttgaaacta-tcctagttcttcaaccccaatgtaaccactcccccaaa 499  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||    
T  2038 acaaatgtgattacaagagttccttgaaactattcctagttcttgaacccctatgtaaacactcccccaaa 2108  T

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Target: scaffold0711 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 499
Target Start/End: Complemental strand, 4342 - 4228
Alignment:
Q  384 aaacgcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatg 483  Q
    |||||| ||||| |||| | ||||| ||  ||| ||||||||||| |||||||| |||||| |||||||||| |||||||||| ||||||||||||   |    
T  4342 aaacgcatccacaaaggtcatccaccaaatgtaacaatgttgaat-acaaatgttattacaagagttccttggaactatcctatttcttcaaccccttcg 4244  T
Q  484 taaccactcccccaaa 499  Q
    ||| ||||||||||||    
T  4243 taagcactcccccaaa 4228  T

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Target: scaffold0711; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 377
Target Start/End: Complemental strand, 4453 - 4369
Alignment:
Q  292 catatacaattatcaaaattaaaaaggataaggaagagaaaataacaccgagatttttatagtagttcaccctttcgtcctcgctt 377  Q
    ||||||||||||  ||||||||| ||||||||||| ||| ||  ||||| | ||||||||||| ||||||||||||||||| ||||    
T  4453 catatacaattaaaaaaattaaagaggataaggaaaagagaacgacacc-atatttttatagttgttcaccctttcgtccttgctt 4369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 4573 - 4458
Alignment:
Q  142 caatgtatatacaattgatgaattac-taagaattggaactaattgatccaagtaaaatggtgaaaacctaattcaaggaattaggccaattttaaccaa 240  Q
    |||||||||| ||||| |||||||   || |||||| |||||||||||||||||  ||| || | ||||||| ||||||||||||  ||||||| | |||    
T  4573 caatgtatatgcaatttatgaattgtataggaattgaaactaattgatccaagttcaatagtaataacctaactcaaggaattagatcaatttttatcaa 4474  T
Q  241 aaagaacttagatcaa 256  Q
    |||  |||||||||||    
T  4473 aaactacttagatcaa 4458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 495
Target Start/End: Original strand, 593 - 699
Alignment:
Q  388 gcctccaccaaggacttccactaatagtagcaatgttgaatcacaaatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaac 487  Q
    |||| |||||||| | ||||||||||||| ||||||||||| ||||||||| ||||| ||||||||| ||| ||  | | |||||||||||| ||||||     
T  593 gccttcaccaaggtcatccactaatagtaacaatgttgaat-acaaatgtgtttacaagagttccttaaaattaaacaatttcttcaacccctatgtaaa 691  T
Q  488 cactcccc 495  Q
    ||||||||    
T  692 cactcccc 699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 35188 - 35253
Alignment:
Q  433 aatgtgattacacgagttccttgaaactatcctagttcttcaaccccaatgtaaccactcccccaa 498  Q
    |||||||||||| || | ||||||||||| |||||||||||||  || || ||| |||||||||||    
T  35188 aatgtgattacaagaatcccttgaaactaccctagttcttcaattcctatctaatcactcccccaa 35253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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