View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1688-Insertion-6 (Length: 77)
Name: NF1688-Insertion-6
Description: NF1688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1688-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 50; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 40203451 - 40203500
Alignment:
| Q |
7 |
aagtttttcgacgacgatggtcgtgtcaaacgaaccggtaattaagtctc |
56 |
Q |
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| T |
40203451 |
aagtttttcgacgacgatggtcgtgtcaaacgaaccggtaattaagtctc |
40203500 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 40207639 - 40207679
Alignment:
| Q |
13 |
ttcgacgacgatggtcgtgtcaaacgaaccggtaattaagt |
53 |
Q |
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| T |
40207639 |
ttcgacgatgatggtcgcgtcaaaagaaccggtaattaagt |
40207679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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