View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16880_high_4 (Length: 385)
Name: NF16880_high_4
Description: NF16880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16880_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 16700731 - 16700363
Alignment:
| Q |
1 |
aaatggaattggtttaagtttgagataatgcctttaaaaagttgagattagggaataaaatgtatcatagattatattcatatgatatgttcattttgtt |
100 |
Q |
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| T |
16700731 |
aaatggaattggtttaagtttgagataatgcctttaaaaagttgagattagggaataaaatgtatcatatattatattcatatgatatgttcattttgtt |
16700632 |
T |
|
| Q |
101 |
gcataaccctacactaattaatagtttgtttataatat--tttgttggattatgtgatattaatatgatggttatgtaaaacttgtggattattgaacaa |
198 |
Q |
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| T |
16700631 |
gcataaccctacactaattaatagtttgtttataatatattttgttggattatgtgatattaatatgatggttatgtaaaacttttggattattgaacaa |
16700532 |
T |
|
| Q |
199 |
agttacttaagaatttttgtttgcactaaaccatgtcaagattgaagttcaagctacagaagtttcccaacaagactctgtaacagttactcaagaaaac |
298 |
Q |
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| T |
16700531 |
agttacttaagaatttttgtttgcactaaaccatgtcaagattgaagttcaagctacagaagtttcccaacaagactctgtaacagttactcaagaaaac |
16700432 |
T |
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| Q |
299 |
atggcaaccgtttcacatctaaccaaaaagccattgaagcaaaatgataaagcactaaaaccgtgctgg |
367 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16700431 |
atggcaaccgtttcacatcttaccaaaaagccattgaagcaaaatgataaagcactaaaaccgtgctgg |
16700363 |
T |
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