View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16880_high_5 (Length: 378)
Name: NF16880_high_5
Description: NF16880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16880_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 12861293 - 12860948
Alignment:
| Q |
19 |
aatgacggtgtaaagatttcttttctttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttccc |
118 |
Q |
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| T |
12861293 |
aatgacggtgtaaagatttcttttctttgtcgcgttcgttcttttctatcactgtaatcagaa---tgaaagaaacggttagagcaatttggaatttccc |
12861197 |
T |
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| Q |
119 |
gcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnaaatttaatttatattaaaatgtaaaataa |
218 |
Q |
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| T |
12861196 |
gcgccaggatttatttataaaacggttgtaacaaccaatttcttcgtttcagagtttccacagttttttt-tatttaatttatattaaaatgtaaaataa |
12861098 |
T |
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| Q |
219 |
agttgcatttacttttaatattggggtttaattatctatg-annnnnnnnnnnnnnnnngccaattggctatgtttctgctttctatcactaatcactat |
317 |
Q |
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| T |
12861097 |
agttgcatttacttttaatattggggtttaattatctatgttttttttttttttttgttgccaattggctatgtttctgctttctatcactaatcactat |
12860998 |
T |
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| Q |
318 |
gttgagcatactatggttagcaaagggctataggtctctcgttcttttca |
367 |
Q |
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| T |
12860997 |
gttgagcatactacggttagcaaagggctataggtctctcgttcttttca |
12860948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 12844224 - 12844459
Alignment:
| Q |
19 |
aatgacggtgtaaagatttcttttctttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttccc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12844224 |
aatgacggtgtaaagatttcttttctttggcgcgttcgttcttttctatcactgtaatcagaa---tgaaagaaacggttagcgcaatttggaatttccc |
12844320 |
T |
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| Q |
119 |
gcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnaaatttaatttatattaaaatgtaaaataa |
218 |
Q |
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| T |
12844321 |
gcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagttttttt--atttaatttatattaaaatgtaaaataa |
12844418 |
T |
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| Q |
219 |
agttgcatttacttttaatattggggtttaattatctatga |
259 |
Q |
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| T |
12844419 |
agtcgcatttacttttaatattggggtttaattgtctatga |
12844459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 12844507 - 12844559
Alignment:
| Q |
315 |
tatgttgagcatactatggttagcaaagggctataggtctctcgttcttttca |
367 |
Q |
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|||||||||||||||| |||||||| | |||||||||||| | |||| ||||| |
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| T |
12844507 |
tatgttgagcatactacggttagcacaaggctataggtctttggttcatttca |
12844559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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