View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16880_low_11 (Length: 287)

Name: NF16880_low_11
Description: NF16880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16880_low_11
NF16880_low_11
[»] chr7 (13 HSPs)
chr7 (12-266)||(9581453-9581707)
chr7 (12-266)||(9729305-9729559)
chr7 (12-266)||(16327176-16327430)
chr7 (12-266)||(540168-540416)
chr7 (12-266)||(4311279-4311532)
chr7 (12-266)||(8783498-8783752)
chr7 (12-181)||(14223144-14223313)
chr7 (121-265)||(23513729-23513873)
chr7 (138-265)||(4462117-4462244)
chr7 (183-265)||(5395862-5395944)
chr7 (139-265)||(13741099-13741225)
chr7 (121-265)||(10439748-10439892)
chr7 (142-265)||(12565684-12565807)
[»] chr4 (8 HSPs)
chr4 (16-266)||(42711184-42711434)
chr4 (12-266)||(14687181-14687435)
chr4 (12-266)||(15349253-15349501)
chr4 (139-265)||(45240267-45240394)
chr4 (176-265)||(11498023-11498112)
chr4 (183-265)||(18290742-18290824)
chr4 (139-248)||(11918125-11918233)
chr4 (121-265)||(10629410-10629551)
[»] chr5 (7 HSPs)
chr5 (12-266)||(23712116-23712370)
chr5 (139-265)||(20446255-20446381)
chr5 (121-265)||(21282320-21282465)
chr5 (142-265)||(18487473-18487596)
chr5 (121-265)||(23602050-23602191)
chr5 (121-265)||(24939193-24939334)
chr5 (145-265)||(24218516-24218633)
[»] chr3 (10 HSPs)
chr3 (9-266)||(12777913-12778170)
chr3 (12-266)||(6813419-6813667)
chr3 (12-266)||(15024254-15024508)
chr3 (139-265)||(20562027-20562153)
chr3 (139-265)||(20564335-20564461)
chr3 (139-265)||(20559719-20559845)
chr3 (121-265)||(13090217-13090358)
chr3 (121-265)||(9362367-9362508)
chr3 (121-265)||(13096373-13096514)
chr3 (220-266)||(3246922-3246968)
[»] scaffold0035 (1 HSPs)
scaffold0035 (12-266)||(51962-52216)
[»] scaffold0090 (1 HSPs)
scaffold0090 (12-266)||(29312-29566)
[»] chr8 (4 HSPs)
chr8 (12-266)||(20000852-20001103)
chr8 (139-265)||(20040479-20040605)
chr8 (121-265)||(21855186-21855327)
chr8 (139-265)||(17619422-17619545)
[»] chr1 (3 HSPs)
chr1 (12-266)||(27045424-27045672)
chr1 (139-232)||(22626469-22626562)
chr1 (183-265)||(21785853-21785932)
[»] scaffold0485 (1 HSPs)
scaffold0485 (12-266)||(11313-11568)
[»] chr6 (8 HSPs)
chr6 (12-266)||(22062920-22063168)
chr6 (12-266)||(19586983-19587222)
chr6 (81-265)||(23519161-23519345)
chr6 (121-265)||(18188979-18189123)
chr6 (139-265)||(17818194-17818320)
chr6 (183-266)||(18852742-18852822)
chr6 (221-266)||(29685293-29685338)
chr6 (224-265)||(24390285-24390326)
[»] chr2 (2 HSPs)
chr2 (55-265)||(24500924-24501134)
chr2 (91-265)||(25339516-25339690)
[»] scaffold0222 (1 HSPs)
scaffold0222 (142-265)||(18509-18632)
[»] scaffold0220 (1 HSPs)
scaffold0220 (121-247)||(11741-11867)
[»] scaffold0566 (1 HSPs)
scaffold0566 (129-265)||(1275-1411)
[»] scaffold0026 (1 HSPs)
scaffold0026 (123-232)||(17029-17138)
[»] scaffold0113 (1 HSPs)
scaffold0113 (121-265)||(38043-38184)
[»] scaffold1184 (1 HSPs)
scaffold1184 (224-258)||(537-571)
[»] scaffold0012 (2 HSPs)
scaffold0012 (186-265)||(12854-12930)
scaffold0012 (186-265)||(8745-8821)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 9581453 - 9581707
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581453 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 9581552  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9581553 tgtctttccttagaacccatgaccatactcacaattatcaatatgaatggaggattattagaactaattgtttgattattctacctaattcggacattac 9581652  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581653 taatctggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 9581707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 9729305 - 9729559
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9729305 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 9729404  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  9729405 tgtctttccttagaacccatgaccatactcacaattatcaatatgaatggaggattattagaactaattgtttgattattctacctaattcagacattac 9729504  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9729505 taatccggaggtggtggaaaatttgctttatgttggtactaatccacaggtacaa 9729559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 16327430 - 16327176
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  16327430 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaactattatctaaacttatatactcttactactt 16327331  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  16327330 tgtccttccttataacccatgaccctactcacaattaccaatatgaatggagaattattagagctaattgtttgactattctacctaattcggacattac 16327231  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16327230 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 16327176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 540416 - 540168
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||      ||||    
T  540416 atcatcacttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actt 540323  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||||    
T  540322 tgtcattccttaaaacccatgaccctactcacaattaccaatatgaaaggagaatcattaaagctaattgtttgattattctacctaattcggacattac 540223  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  540222 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 540168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 4311279 - 4311532
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||| |||||| ||| || |||| ||| |||||||||||||| ||||||||||||||| |  || ||||||| | |||||||||||||||||||||    
T  4311279 atcatcacctttatttctaggaagtttgggg-gagtgtgaatcaagagatcaagaggatagaggggaactattatctagacttatatactctcactactt 4311377  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4311378 tgtcctttcttagaacccatggccctactcacaattaccaatatgaatggagaattattagagctaattgtttgattattctacctaattcggacattac 4311477  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  4311478 taatccggaggtggtggaaaatttgctttacgttggtactaacccacatgtacaa 4311532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 8783752 - 8783498
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||| |||||||||| || |||| ||||||||||||||||| |||||||| ||||||| |  || ||||||| | |||||||||||||||||||||    
T  8783752 atcatcacctttattgctaggaagtttggggtgagtgtgaatcaatggatcaaggggatagaggggaactattatctagacttatatactctcactactt 8783653  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    || | ||||||| |||||||| || ||||||||||||| |||||||| |||||||||||| |  ||||| |||||||||||| |||||||||||||| ||    
T  8783652 tgcccttccttacaacccatggccctactcacaattacaaatatgaaaggagaattattacagataattttttgattattctccctaattcggacataac 8783553  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8783552 taatccggaggtggtggaaaatttgctttatgttggtactaacccacatgtacaa 8783498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 14223313 - 14223144
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| || || ||||||| |||||||||||||||||||||||    
T  14223313 atcatcacttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggaaagaggagaactattatctaaacttatatactctcactactt 14223214  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattg 181  Q
    |||| ||||||| | ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||    
T  14223213 tgtcattccttaaagcccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattg 14223144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 23513729 - 23513873
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| ||||| || | |||||||||||| |||||| |||||| | | ||   ||||||  ||||||||||||||||||||||||||||||||||||||    
T  23513729 ttagaatccatggcccttctcacaattacctatatgagtggagagtcaataatgctaattacttgattattctacctaattcggacattactaatccgga 23513828  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| ||  |||||||||| |||||||||||||||||    
T  23513829 ggtggtagaaaactttgtttatgttggcactaacccacaggtaca 23513873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 265
Target Start/End: Complemental strand, 4462244 - 4462117
Alignment:
Q  138 actcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgc 237  Q
    ||||||||| |||||||||| | || ||| |||||| || ||||||||||||||||||||||| ||  ||| ||||| ||| ||||||||||||||||||    
T  4462244 actcacaatgaccaatatgattagaaaatcattagagctcattgtttgattattctacctaatccgttcataactaacccgaaggtggtggaaaatttgc 4462145  T
Q  238 tttatgttggtactaacccacaggtaca 265  Q
    ||||| ||||||||||||||| ||||||    
T  4462144 tttatattggtactaacccactggtaca 4462117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 5395862 - 5395944
Alignment:
Q  183 ttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||    
T  5395862 ttgattattctacctaattcagatattactaatccggaggtggtagaaaacttggtttatgttggcactaacccacaggtaca 5395944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 13741099 - 13741225
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||||||||||||| |||||| | | ||    |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |   |    
T  13741099 ctcacaattaccaatatgagtggagagtcaataatgataattgcttgattattctacctaattcggacattactaattcggaggtggtagaaaactatgt 13741198  T
Q  239 ttatgttggtactaacccacaggtaca 265  Q
    ||||||||| ||||| |||||||||||    
T  13741199 ttatgttggcactaatccacaggtaca 13741225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 10439892 - 10439748
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||||||||  || | ||||||||||||||||||| |||||| | | ||    |||||  |||||||||||||||||||| || |||||||| | | |    
T  10439892 ttagaacccatagcccttctcacaattaccaatatgagtggagagtcaataatgataatttcttgattattctacctaattcagatattactaagctgaa 10439793  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| ||| |||||||||| |||||||||||||||||    
T  10439792 ggtggtagaaaacttggtttatgttggcactaacccacaggtaca 10439748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 12565684 - 12565807
Alignment:
Q  142 acaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgcttta 241  Q
    |||||||||||||||| |||||| | | ||   ||||||  |||||||||  ||||||||| || ||||||||| |||||||||| ||||| ||| ||||    
T  12565684 acaattaccaatatgagtggagagtcaataatgctaatttcttgattatttaacctaattcagatattactaattcggaggtggtagaaaacttggttta 12565783  T
Q  242 tgttggtactaacccacaggtaca 265  Q
    ||||||||||||||||| ||||||    
T  12565784 tgttggtactaacccaccggtaca 12565807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 42711434 - 42711184
Alignment:
Q  16 tcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42711434 tcacttttattgctaagaggtttagggtgagtgtgaatcaaaggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtc 42711335  T
Q  116 tttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaat 215  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42711334 tttccttagaacccatgaccatactcataattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaat 42711235  T
Q  216 ccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42711234 ccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 42711184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 14687435 - 14687181
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||    
T  14687435 atcatcacttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggatagaggagaactattatctaaacttatatactctcactactt 14687336  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  14687335 tgtcattccttagaacccatgaccctactcacaattaccaatataaatggagaattattagagctaattgtttgattatgctacctaattcggacattac 14687236  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14687235 taatccggaggcggtggaaaatttgctttatgttggtactaacccacaggtacaa 14687181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 15349501 - 15349253
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| || ||||||| |||||| ||||||      ||||    
T  15349501 atcatcacttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actt 15349408  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  15349407 tgtcattccttaaaacccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattgtttgattattctacctaattcggacattac 15349308  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349307 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 15349253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 265
Target Start/End: Complemental strand, 45240394 - 45240267
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaa-ttgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgc 237  Q
    ||||||||||||||||||| |||||| | | ||   |||| ||| |||||||||||||| |||||| | |||||||||||||||||||| ||||| |||     
T  45240394 ctcacaattaccaatatgagtggagagtcaataacgctaaattgcttgattattctaccaaattcgaatattactaatccggaggtggtagaaaacttgg 45240295  T
Q  238 tttatgttggtactaacccacaggtaca 265  Q
    |||||||||| |||||||||||||||||    
T  45240294 tttatgttggcactaacccacaggtaca 45240267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 11498112 - 11498023
Alignment:
Q  176 taattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||||||||||||||||||  | |||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||    
T  11498112 taattgcttgattattctacctaattcaaatattactaatccggaggtggtagaaaacttggtttatgttggcactaacccacaggtaca 11498023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 18290742 - 18290824
Alignment:
Q  183 ttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||||||||||||||||| || |||||||||||||||||| | ||||| ||| |||||||||| |||||||||||||||||    
T  18290742 ttgattattctacctaattcagatattactaatccggaggtgatagaaaacttggtttatgttggcactaacccacaggtaca 18290824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 11918233 - 11918125
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||||||||||||| |||| | | | |||  |||||| ||||||||||||||||||| ||||||| ||||| ||| ||||||||||||| ||| |    
T  11918233 ctcacaattaccaatatgagtggaaagtcaatagggctaatt-tttgattattctacctaatccggacataactaacccgaaggtggtggaaaaattgtt 11918135  T
Q  239 ttatgttggt 248  Q
    ||||||||||    
T  11918134 ttatgttggt 11918125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 10629410 - 10629551
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| ||||| || | ||||||||| ||||||||| |||||| | | ||   ||||||  |||||||||||||||||||| || |||||||||||| |    
T  10629410 ttagaatccatggcccttctcacaattcccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaa 10629509  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    || ||| ||||| |   |||||||||| |||||||||||||||||    
T  10629510 ggcggtagaaaact---tttatgttggcactaacccacaggtaca 10629551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 23712370 - 23712116
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23712370 atcatcacttttgttgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 23712271  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  23712270 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggaggattattagaactaattttttgattattctacctaattcggacattac 23712171  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23712170 taatccggaggtggtggaaaatttgctttatgttggtcctaacccacaggtacaa 23712116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 265
Target Start/End: Complemental strand, 20446381 - 20446255
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||||||||||||| |||||| | | ||   ||||||  |||||||||||||||||||| || |||||||||||| ||||||| ||||| ||| |    
T  20446381 ctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaacttggt 20446282  T
Q  239 ttatgttggtactaacccacaggtaca 265  Q
    ||||||||| |||||||||||||||||    
T  20446281 ttatgttggcactaacccacaggtaca 20446255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 21282465 - 21282320
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaa-ttgtttgattattctacctaattcggacattactaatccgg 219  Q
    |||||| |||| ||| | ||||||||||||||||||| |||||| | | ||   |||| ||| |||||||||||||| |||||| | |||||||||||||    
T  21282465 ttagaatccataacccttctcacaattaccaatatgagtggagagtcaataacgctaaattgcttgattattctaccaaattcgaatattactaatccgg 21282366  T
Q  220 aggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    ||||||| ||||| ||| |||||||||| |||||||||||||||||    
T  21282365 aggtggtagaaaacttggtttatgttggcactaacccacaggtaca 21282320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 18487596 - 18487473
Alignment:
Q  142 acaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgcttta 241  Q
    |||||||||||||||| |||||| | | ||   ||||||  |||||||||||||||||||| || |||| |||||| |||||||| ||||| ||| ||||    
T  18487596 acaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattattaatcctgaggtggtagaaaacttggttta 18487497  T
Q  242 tgttggtactaacccacaggtaca 265  Q
    |||||| |||||||||||||||||    
T  18487496 tgttggcactaacccacaggtaca 18487473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 23602191 - 23602050
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| ||||| || | ||||||||| ||||||||| ||| || | | ||   ||||||  |||||||||||||||||||| || |||||||||||| |    
T  23602191 ttagaatccatggcctttctcacaattcccaatatgagtggcgagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaa 23602092  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| |   |||||||||| |||||||||||||||||    
T  23602091 ggtggtagaaaact---tttatgttggcactaacccacaggtaca 23602050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 24939193 - 24939334
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| ||||| || | ||||||||| ||||||||| ||| || | | ||   ||||||  |||||||||||||||||||| || ||||||||| || |    
T  24939193 ttagaatccatggcccttctcacaattcccaatatgagtggcgagtcaataatgctaatttcttgattattctacctaattcagatattactaattcgaa 24939292  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| |   |||||||||| |||||||||||||||||    
T  24939293 ggtggtagaaaact---tttatgttggcactaacccacaggtaca 24939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 24218516 - 24218633
Alignment:
Q  145 attaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgt 244  Q
    ||||||||||||| |||||| | | ||   ||||||  |||||||||||||||||||| || ||||||||||||||| |||| ||||| |    ||||||    
T  24218516 attaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccggagatggtagaaaact---attatgt 24218612  T
Q  245 tggtactaacccacaggtaca 265  Q
    ||| ||||||||||| |||||    
T  24218613 tggcactaacccacatgtaca 24218633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 12778170 - 12777913
Alignment:
Q  9 gacatcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcacta 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  12778170 gacatcatcccttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaattattatccaaacttatttactctcacta 12778071  T
Q  109 ctttgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacat 208  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12778070 ctttgtccttccttagaacccatgaccctactcacaattatcaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacat 12777971  T
Q  209 tactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777970 tactaattcggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 12777913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 6813419 - 6813667
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||| ||||  ||||||| |||||||||||||||||||||||||||| || ||||||| |||||| ||||||      ||||    
T  6813419 atcatcacttttattgctaagaagtttgaggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actt 6813512  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| || |||||||  |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  6813513 tgtcattccttaaaaaccatgactctactcacaattaccaatatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattac 6813612  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813613 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 6813667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 15024254 - 15024508
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||| |   | ||||||| | |||||||||||||||||||||    
T  15024254 atcatcacttttattgctagaaagtttggggtgagtgtgaatcaagggatcaagaggatagaggggtactattatctatacttatatactctcactactt 15024353  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| | ||||| ||    
T  15024354 tgtccttccttagaacccatgaccctactcacaattaccaatatgaatggagaattaatagagctaattgttttattattctacctaatccagacataac 15024453  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  15024454 taatccggaggtggtggaaaatttgcattatgttggtactaatccacatgtacaa 15024508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 20562027 - 20562153
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||||||||||||| |||||| | | ||  |||||||  |||||||||||||||||||| || ||||||||| |||||||||| ||||| | | |    
T  20562027 ctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtagaaaactaggt 20562126  T
Q  239 ttatgttggtactaacccacaggtaca 265  Q
    || |||||| |||||||||||||||||    
T  20562127 ttgtgttggcactaacccacaggtaca 20562153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 20564335 - 20564461
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||||||||||||| |||||| | | ||  |||||||  |||||||||||||||||||| || ||||||||| |||||||||| ||||| | | |    
T  20564335 ctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtagaaaactaggt 20564434  T
Q  239 ttatgttggtactaacccacaggtaca 265  Q
    || |||||| |||||||||||||||||    
T  20564435 ttgtgttggcactaacccacaggtaca 20564461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 20559719 - 20559845
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||||||||||||| |||||| | | ||  |||||||  |||||||||||||||||||| || ||||||||| |||||||||| ||||| | | |    
T  20559719 ctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaattcggaggtggtagaaaactaggt 20559818  T
Q  239 ttatgttggtactaacccacaggtaca 265  Q
    || |||||| |||||||||||| ||||    
T  20559819 ttgtgttggcactaacccacagataca 20559845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 13090358 - 13090217
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| ||||| || | ||||||||| ||||||||| ||| || | | ||   ||||||  |||||||||||||||||||| || |||||||||||| |    
T  13090358 ttagaatccatggcccttctcacaattcccaatatgagtggtgagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaa 13090259  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| |   |||||||||| |||||||||||||||||    
T  13090258 ggtggtagaaaact---tttatgttggcactaacccacaggtaca 13090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 9362508 - 9362367
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| ||||| || | ||||||||  ||||||||| |||||| | | ||   ||||||  ||||||||||||||||||||  | |||||||||||| |    
T  9362508 ttagaatccatggcccttctcacaatccccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcaaatattactaatccgaa 9362409  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| |   |||||||||| |||||||||||||||||    
T  9362408 ggtggtagaaaact---tttatgttggcactaacccacaggtaca 9362367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 13096373 - 13096514
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| ||||| || | ||||||||| |||| |||| |||||| | | ||   ||||||  |||||||||||||||||||| || |||||||||||| |    
T  13096373 ttagaatccatggcccttctcacaattcccaacatgagtggagagtcaataattctaatttcttgattattctacctaattcagatattactaatccgaa 13096472  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| |   |||||||||  |||||||||||||||||    
T  13096473 ggtggtagaaaact---tttatgttgacactaacccacaggtaca 13096514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 3246968 - 3246922
Alignment:
Q  220 aggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||||    
T  3246968 aggtggtggaaaatttgttttatttttgtactaacccacaggtacaa 3246922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 52216 - 51962
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  52216 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaactattatctaaacttatatactcttactactt 52117  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  52116 tgtccttccttataacccatgaccctactcacaattaccaatatgaatggagaattattagagctaattgtttgactattctacctaattcggacattac 52017  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52016 tattccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 51962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 29312 - 29566
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||    
T  29312 atcatcacttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactctcactactt 29411  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  29412 tgtcattccttaaaacccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattgtatgattattctacctaattcggacattac 29511  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29512 taatccggaggtggtagaaaatttgctttatgttggtactaacccacaggtacaa 29566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 20000852 - 20001103
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||    
T  20000852 atcatcacttttattgctaag---tttggggtgagtgtgaatcaagggatcaagaggatagatgagaactattatctaaacttttatactctcactactt 20000948  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  20000949 tgtcattccttaaaacccatgaccctactcacaattaccaatatgaatggagaatcattagagctaattgtttgattattctacctaattcggacattac 20001048  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20001049 taatctggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 20001103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 265
Target Start/End: Complemental strand, 20040605 - 20040479
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||||||||||||| |||||| | | ||  |||||||  |||||||||||||||||||| || ||||||||||| |||||||| ||||| | | |    
T  20040605 ctcacaattaccaatatgagtggagagtcaatactactaatttcttgattattctacctaattcagatattactaatccagaggtggtagaaaactaggt 20040506  T
Q  239 ttatgttggtactaacccacaggtaca 265  Q
    ||||||||| |||||||||||||||||    
T  20040505 ttatgttggcactaacccacaggtaca 20040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 21855327 - 21855186
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||| | | ||   ||||||  |||||||||||||||||||| || |||||||||||| |    
T  21855327 ttagaacccataacccttctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaa 21855228  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| |   |||||||||| ||||||| |||||||||    
T  21855227 ggtggtagaaaact---tttatgttggcactaacctacaggtaca 21855186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 17619422 - 17619545
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||| ||||||||| |||||| | | ||   ||||||  |||||||||||||||||||| || |||||||||||| ||||||| ||||| |   |    
T  17619422 ctcacaatttccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgaaggtggtagaaaact---t 17619518  T
Q  239 ttatgttggtactaacccacaggtaca 265  Q
    ||||||||| |||||||||||||||||    
T  17619519 ttatgttggcactaacccacaggtaca 17619545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 27045424 - 27045672
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| || ||||||| |||||| ||||||      ||||    
T  27045424 atcatcacttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actt 27045517  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  27045518 tgtcattccttaaaacccatgaccctactcacaattaccaatatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattac 27045617  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045618 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 27045672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 22626562 - 22626469
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaa 232  Q
    ||||||||||||||||||| |||||| | | ||   ||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  22626562 ctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatccggtggtggtagaaaa 22626469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 21785932 - 21785853
Alignment:
Q  183 ttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||||||||||| || |||||||||||| ||||||| ||||| |   |||||||||| |||||||||||||||||    
T  21785932 ttgatttttctacctaattcagatattactaatccgaaggtggtagaaaact---tttatgttggcactaacccacaggtaca 21785853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 11568 - 11313
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||| ||||||||||  | |||| |||||||||||||||||||||||||||||||||| |  || ||||||| | ||||||||| |||||||||||    
T  11568 atcatcacctttattgctagaaagtttggggtgagtgtgaatcaagggatcaagaggatagaggggaactattatctagacttatataatctcactactt 11469  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||    
T  11468 tgtccttccttagaacccatgaccatactcacaattaccaatatgagtggagaattattagagctaattgtttgattattctacctaatccggacataac 11369  T
Q  212 taatccggaggtggtgg-aaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11368 taatctggaggtggtggaaaaatttgctttatgttggtactaacccacaggtacaa 11313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 22063168 - 22062920
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| || ||||||| |||||| ||||||      ||||    
T  22063168 atcatcacttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggatagatgagaactattatctaaacttttatact------actt 22063075  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||| || |||||||  |||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  22063074 tgtcattccttaaaaaccatgactctactcacaattaccaacatgcatggagaatcattagagctaattgtttgattattctacctaattcggacattac 22062975  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22062974 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 22062920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 19587222 - 19586983
Alignment:
Q  12 atcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactt 111  Q
    |||||||| |||||||||| || |||| |||||||| |||||||||||||||||||||||||    || ||||||| | |||||||||||||||||||||    
T  19587222 atcatcacctttattgctaggaagtttggggtgagtctgaatcaagggatcaagaggatagagaggaactattatctacacttatatactctcactactt 19587123  T
Q  112 tgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattac 211  Q
    |||| ||||||||||||||||  | |||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||                   
T  19587122 tgtccttccttagaacccatggacctacttacaattaccaatataaacggagaattattagagctaattgtttgattattctacc--------------- 19587038  T
Q  212 taatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  19587037 taatctggaggtggtggaaaatttgatttatgttggtattaacccacaggtacaa 19586983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 81 - 265
Target Start/End: Complemental strand, 23519345 - 23519161
Alignment:
Q  81 tattatccaaacttatatactctcactactttgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaatt 180  Q
    ||||||| | ||||| |||| |||| |||  |||||||||||| ||||||||||| | ||||||| ||||||||||   ||| | | | |||  ||||||    
T  23519345 tattatctagacttagataccctcaataccatgtctttccttataacccatgacccttctcacaactaccaatatgtgcggaaagtaaatagggctaatt 23519246  T
Q  181 gtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    ||||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  23519245 gtttgattattctaccttatttggacataactaatccggagatggtggaaaatttgctttatgttggaactaacccacgggtaca 23519161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 18189123 - 18188979
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| |||||||| | ||||||||||||||||||| |||||| | | ||   ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  18189123 ttagaatccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggataatactaatccgga 18189024  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| ||| |||||||||| |||||||||||||||||    
T  18189023 ggtggtagaaaacttggtttatgttggcactaacccacaggtaca 18188979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 17818194 - 17818320
Alignment:
Q  139 ctcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgct 238  Q
    ||||||||||||||||||| |||||| | | ||   ||||||  |||||||||||||||||||| || |||||||||||| ||||||| ||||| ||| |    
T  17818194 ctcacaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccgtaggtggtagaaaacttggt 17818293  T
Q  239 ttatgttggtactaacccacaggtaca 265  Q
    ||||||||| |||||||||||||||||    
T  17818294 ttatgttggcactaacccacaggtaca 17818320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 18852742 - 18852822
Alignment:
Q  183 ttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    |||||||||||||||||||| || ||||||||||||||| |||| |||||||   |||||||||| ||||||||||||||||||    
T  18852742 ttgattattctacctaattcagatattactaatccggagatggtagaaaatt---tttatgttggcactaacccacaggtacaa 18852822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 29685293 - 29685338
Alignment:
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtacaa 266  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  29685293 ggtggtggaaaatttgctttatgttagtactaacccacaggtacaa 29685338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 24390326 - 24390285
Alignment:
Q  224 ggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||||||||||||||||| ||||||||||  |||||||||    
T  24390326 ggtggaaaatttgctttatgctggtactaacaaacaggtaca 24390285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 265
Target Start/End: Original strand, 24500924 - 24501134
Alignment:
Q  55 aagggatcaagaggatagatgaaaattattatccaaacttatatactctcactactttgtctttccttagaacccatgaccatactcacaattaccaata 154  Q
    |||||||||| ||||| || | ||| || |||| | ||||| | || ||||||||  ||| ||| ||||||| ||||| || | ||||||||||||||||    
T  24500924 aagggatcaataggattgagggaaactactatctagacttagaaaccctcactaccatgttttttcttagaatccatggcccttctcacaattaccaata 24501023  T
Q  155 tgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaac 254  Q
    | | |||||| | | ||   ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||    
T  24501024 ttagtggagagtcaataatgctaattgcttgattattctacctaattcggacattactaatccggaggtggtagaaaacttgatttatgttggcactaac 24501123  T
Q  255 ccacaggtaca 265  Q
    |||||||||||    
T  24501124 ccacaggtaca 24501134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 265
Target Start/End: Complemental strand, 25339690 - 25339516
Alignment:
Q  91 acttatatactctcactactttgtctttccttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattat 190  Q
    ||||| |||| ||||| ||| |||| || |||||||| |||| ||  |||||||||||||||||||| ||||   | | |||  ||||||||||||||||    
T  25339690 acttagataccctcaccactatgtcctttcttagaactcatggcccaactcacaattaccaatatgagtggaaggtcaatagggctaattgtttgattat 25339591  T
Q  191 tctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||| |||||| |||| |||||    
T  25339590 tctacctaatccggacataactaatctggaggtggtggaaaattttctttatgttggcactaactcacatgtaca 25339516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 18509 - 18632
Alignment:
Q  142 acaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtggaaaatttgcttta 241  Q
    |||||||||||||||| |||||| | | ||   ||||||  |||||||||||||||||||| || |||||||||||||||||||| ||||| ||| ||||    
T  18509 acaattaccaatatgagtggagagtcaataatgctaatttcttgattattctacctaattcagatattactaatccggaggtggtagaaaacttggttta 18608  T
Q  242 tgttggtactaacccacaggtaca 265  Q
    |||||| |||||||||||||||||    
T  18609 tgttggcactaacccacaggtaca 18632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 247
Target Start/End: Complemental strand, 11867 - 11741
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| |||||||| | ||||||||||||||||||| |||||| | | ||   ||||||| ||||||||||||||||||||||| |||||||||| |||    
T  11867 ttagaatccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatctgga 11768  T
Q  221 ggtggtggaaaatttgctttatgttgg 247  Q
    |||||| ||||| ||| ||||||||||    
T  11767 ggtggtagaaaacttggtttatgttgg 11741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 129 - 265
Target Start/End: Original strand, 1275 - 1411
Alignment:
Q  129 catgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggaggtggtgg 228  Q
    ||||||| | || |||||||||||||||| |||||| | | |    ||||||  |||||||||||||||||||| || |||||||||| ||||||||| |    
T  1275 catgacccttctaacaattaccaatatgagtggagagtcaattatgctaatttcttgattattctacctaattcagatattactaatctggaggtggtag 1374  T
Q  229 aaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||| ||| |||||||||| |||||||||||||||||    
T  1375 aaaacttggtttatgttggcactaacccacaggtaca 1411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 17029 - 17138
Alignment:
Q  123 agaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccggagg 222  Q
    |||| |||||||| | ||||||||||||||||||| |||||| | | ||   ||||||| ||||||||||||||||||||||| ||||||||| | ||||    
T  17029 agaatccatgacccttctcacaattaccaatatgagtggagagtcaataatgctaattgcttgattattctacctaattcggatattactaatacagagg 17128  T
Q  223 tggtggaaaa 232  Q
    |||| |||||    
T  17129 tggtagaaaa 17138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 38184 - 38043
Alignment:
Q  121 ttagaacccatgaccatactcacaattaccaatatgaatggagaattattagaactaattgtttgattattctacctaattcggacattactaatccgga 220  Q
    |||||| ||||| || | ||||||||| ||||||||| ||| || | | ||   ||||||  |||||||||||||||||||| || ||||||||| |  |    
T  38184 ttagaatccatggcccttctcacaatttccaatatgagtggcgagtcaataatgctaatttcttgattattctacctaattcagatattactaattctaa 38085  T
Q  221 ggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||| ||||| |   |||||||||| |||||||||||||||||    
T  38084 ggtggtagaaaact---tttatgttggcactaacccacaggtaca 38043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 571 - 537
Alignment:
Q  224 ggtggaaaatttgctttatgttggtactaacccac 258  Q
    |||||||||||||||||||||||||||||||||||    
T  571 ggtggaaaatttgctttatgttggtactaacccac 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 12930 - 12854
Alignment:
Q  186 attattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||||||||||| |  || |||||||||| ||||||||| ||||| ||   ||||||||| |||||||||||||||||    
T  12930 attattctacctaaattagatattactaatctggaggtggtagaaaactt---ttatgttggcactaacccacaggtaca 12854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 8821 - 8745
Alignment:
Q  186 attattctacctaattcggacattactaatccggaggtggtggaaaatttgctttatgttggtactaacccacaggtaca 265  Q
    |||||||||||||| |  || |||||||||| ||||||||| ||||| |   |||||||||| ||||||||||| |||||    
T  8821 attattctacctaaattagatattactaatctggaggtggtagaaaact---tttatgttggcactaacccacatgtaca 8745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University