View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16880_low_3 (Length: 492)
Name: NF16880_low_3
Description: NF16880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16880_low_3 |
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| [»] scaffold0129 (2 HSPs) |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0129 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 3409 - 3266
Alignment:
| Q |
173 |
aatcaatttaaattgagtggtgtagttgatacatggtttgtaacaaacctgctgaaggtggttattttggttctaattatgtagttcaacatttgtgtgt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3409 |
aatcaatttaaattgagtggtgtagttgatacatggtttgtaacaaccctgctgaaggtggttattttggttctaattatgtagttcaacatttgtgtgt |
3310 |
T |
|
| Q |
273 |
tttggttgtattgttagttgaaacattgtattgtacttcttttt |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
3309 |
tttggttgtaatgttagttgaaacattgtattctacttcttttt |
3266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3581 - 3460
Alignment:
| Q |
1 |
ttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagctaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3581 |
ttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagctaca |
3482 |
T |
|
| Q |
101 |
acattctaggaagaagacgaac |
122 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
3481 |
acattcaaggaagaagacgaac |
3460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 31814922 - 31814779
Alignment:
| Q |
173 |
aatcaatttaaattgagtggtgtagttgatacatggtttgtaacaaacctgctgaaggtggttattttggttctaattatgtagttcaacatttgtgtgt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31814922 |
aatcaatttaaattgagtggtgtagttgatacatggtttgtaacaaccctgctgaaggtggttattttggttctaattatgtagttcaacatttgtgtgt |
31814823 |
T |
|
| Q |
273 |
tttggttgtattgttagttgaaacattgtattgtacttcttttt |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
31814822 |
tttggttgtaatgttagttgaaacattgtattctacttcttttt |
31814779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 31815094 - 31814973
Alignment:
| Q |
1 |
ttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagctaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31815094 |
ttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaacgaagaaaaacgagaagttgaagaagaagctaca |
31814995 |
T |
|
| Q |
101 |
acattctaggaagaagacgaac |
122 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
31814994 |
acattcaaggaagaagacgaac |
31814973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 22059315 - 22059172
Alignment:
| Q |
173 |
aatcaatttaaattgagtggtgtagttgatacatggtttgtaacaaacctgctgaaggtggttattttggttctaattatgtagttcaacatttgtgtgt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22059315 |
aatcaatttaaattgagtggtgtagttgataaatggtttgtaacaaccctgatgaaggtggttattttggttctaattatgtagttcaacatttatgtgt |
22059216 |
T |
|
| Q |
273 |
tttggttgtattgttagttgaaacattgtattgtacttcttttt |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
22059215 |
tttggttgtaatgttagttgaaacattgtattctacttcttttt |
22059172 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22059487 - 22059366
Alignment:
| Q |
1 |
ttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagctaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22059487 |
ttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagctaca |
22059388 |
T |
|
| Q |
101 |
acattctaggaagaagacgaac |
122 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
22059387 |
acattcaaggaagaagacgaac |
22059366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 364 - 484
Target Start/End: Original strand, 30148342 - 30148462
Alignment:
| Q |
364 |
acaaagttatcatcgatgttaaggtacgcaactctctatcttcttcccactcccaattcgtatcttcttcgtcgattacacattcagccacttccttcgt |
463 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30148342 |
acaaagttatcatcaatgttaaggtacgcaactctctatcttcttcccactcccaattcgtatcttcttcgtcgattacacattcagccacttccttcgt |
30148441 |
T |
|
| Q |
464 |
tcattaataatgttgatgatg |
484 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30148442 |
tcattaataatgttgatgatg |
30148462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7799539 - 7799418
Alignment:
| Q |
1 |
ttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagctaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
7799539 |
ttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagctaca |
7799440 |
T |
|
| Q |
101 |
acattctaggaagaagacgaac |
122 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
7799439 |
acattcaaggaagaagacgaac |
7799418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19398640 - 19398519
Alignment:
| Q |
1 |
ttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagctaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
19398640 |
ttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagctaca |
19398541 |
T |
|
| Q |
101 |
acattctaggaagaagacgaac |
122 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
19398540 |
acattcaaggaagaagacgaac |
19398519 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 173 - 303
Target Start/End: Complemental strand, 19398468 - 19398338
Alignment:
| Q |
173 |
aatcaatttaaattgagtggtgtagttgatacatggtttgtaacaaacctgctgaaggtggttattttggttctaattatgtagttcaacatttgtgtgt |
272 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
19398468 |
aatcaattcaaattgactggtgtagttgatacatggtttgtaacaaccctgttgaagttggttattttggttgtaatggtgtagttcaacatttgtgtgt |
19398369 |
T |
|
| Q |
273 |
tttggttgtattgttagttgaaacattgtat |
303 |
Q |
| |
|
|||||||||| | |||||| ||||||||||| |
|
|
| T |
19398368 |
tttggttgtaattttagtttaaacattgtat |
19398338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 7799372 - 7799249
Alignment:
| Q |
180 |
ttaaattgagtggtgtagttgatacatggtttgtaacaaacctgctgaaggtggttattttggttctaattatgtagttcaacatttgtgtgttttggtt |
279 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| | || ||||| |||||||| ||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
7799372 |
ttaagttgactggtgtagttgatacatggtttgtaacaatcatgttgaagttggttattatggttgtaatggtgtagttcaacatttgtgtgttttggtt |
7799273 |
T |
|
| Q |
280 |
gtattgttagttgaaacattgtat |
303 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
7799272 |
gtaatgttagttgaaacattgtat |
7799249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 426 - 485
Target Start/End: Original strand, 30153371 - 30153430
Alignment:
| Q |
426 |
tcttcttcgtcgattacacattcagccacttccttcgttcattaataatgttgatgatgt |
485 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
30153371 |
tcttcatcgtcgattacacattcagcctcttccttcgttcattcacaatgttgatgatgt |
30153430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 426 - 484
Target Start/End: Original strand, 30037785 - 30037843
Alignment:
| Q |
426 |
tcttcttcgtcgattacacattcagccacttccttcgttcattaataatgttgatgatg |
484 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||| | |||||| |||||| |
|
|
| T |
30037785 |
tcttcatcgtcgattacacattcagcctcttccttcgttcattgacaatgttaatgatg |
30037843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 426 - 484
Target Start/End: Original strand, 30040077 - 30040135
Alignment:
| Q |
426 |
tcttcttcgtcgattacacattcagccacttccttcgttcattaataatgttgatgatg |
484 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||| | |||||| |||||| |
|
|
| T |
30040077 |
tcttcatcgtcgattacacattcagcctcttccttcgttcattgacaatgttaatgatg |
30040135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19398737 - 19398709
Alignment:
| Q |
1 |
ttccatgtgattgcaattgtgaagtggtg |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19398737 |
ttccatgtgattgcaattgtgaagtggtg |
19398709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 426 - 484
Target Start/End: Complemental strand, 44997 - 44939
Alignment:
| Q |
426 |
tcttcttcgtcgattacacattcagccacttccttcgttcattaataatgttgatgatg |
484 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||| | |||||| |||||| |
|
|
| T |
44997 |
tcttcatcgtcgattacacattcagcctcttccttcgttcattgacaatgttaatgatg |
44939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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