View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16880_low_4 (Length: 461)
Name: NF16880_low_4
Description: NF16880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16880_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 20428780 - 20429225
Alignment:
| Q |
1 |
gtctatttgatattgcaatttgcaattcttcattatagtttgtaattgcaatttacaaacccagcaccatgtgacttgtgtctcaaattacattagggat |
100 |
Q |
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| T |
20428780 |
gtctatttgatattgcaatttgcaattcttcattatagtttgtaattgcaatttacaaacccagcaccatgtgacttgtgtctcagattacattagggat |
20428879 |
T |
|
| Q |
101 |
tttgaagtacttgcaattaaggtaattgctccaaggttcaccgaaacgaacatagctagaattgagaaggctagtggggagtgcctcgccttgatccgct |
200 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20428880 |
tttgaagtacctgcaattatggtaattgctccaaggttcacagaaacgaacatagctagaattgagaaggctagtggggagtgcctcgtcttgatccgct |
20428979 |
T |
|
| Q |
201 |
ggctcctagagctcctttatgccagaacatggtatgtattttaatgctacttttgttttcttattgcaattataagtgttattattttgtcaaagttgca |
300 |
Q |
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| T |
20428980 |
ggctcctagagctcctttatgccagaacatggtatgtattttaatgctacttttgttttcttattgcaattataagtgttattattttgtcaaagttgca |
20429079 |
T |
|
| Q |
301 |
gtaatttttgaagtctggatattggcttagctcaagtgaccaaacattataagtttataatagttttggatttcaaacctcatatatcataacacttatg |
400 |
Q |
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| T |
20429080 |
gtaatttttgaagtctggatattggcttagctcatgtgagcaaacattataagtttataatagttttggctttcaaacctcatatatcataacacatatg |
20429179 |
T |
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| Q |
401 |
tgcttgtcctgatgtcaaggctccttttttcactgtcatttcattt |
446 |
Q |
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| T |
20429180 |
tgcttgtcctgatgtcaaggctccttttttcactgtcatttcattt |
20429225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 92 - 308
Target Start/End: Original strand, 44439205 - 44439422
Alignment:
| Q |
92 |
attagggattttgaagtacttgcaattaaggtaattgctccaaggttcaccgaaacgaacatagctagaattgagaaggctagtggggagtgcctcgcct |
191 |
Q |
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||||||| || |||||||| |||||||||||||| ||||| |||||||||||||| | || |||||||||||||||||| |||||||||||||| ||| |
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| T |
44439205 |
attagggtttatgaagtacctgcaattaaggtaactgctctaaggttcaccgaaaaggccagggctagaattgagaaggctggtggggagtgcctcacct |
44439304 |
T |
|
| Q |
192 |
t-gatccgctggctcctagagctcctttatgccagaacatggtatgtattttaatgctacttttgttttcttattgcaattataagtgttattattttgt |
290 |
Q |
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| |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||||| ||| |||||||||| ||||| | |
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| T |
44439305 |
ttgatcagctggctcttagagctcctttaggccagaacacggtatgtattttaatactactcttgtttgcttattgttattctaagtgttataattttat |
44439404 |
T |
|
| Q |
291 |
caaagttgcagtaatttt |
308 |
Q |
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| T |
44439405 |
aaaaattgcagtaatttt |
44439422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 16232936 - 16232981
Alignment:
| Q |
4 |
tatttgatattgcaatttgcaattcttcattatagtttgtaattgc |
49 |
Q |
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| T |
16232936 |
tatttgatatttcaacttgcaattcttcattgtagtttgtaattgc |
16232981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 10259124 - 10259168
Alignment:
| Q |
4 |
tatttgatattgcaatttgcaattcttcattatagtttgtaattg |
48 |
Q |
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| T |
10259124 |
tatttgatattggaacttgtaattcttcattatagtttgtaattg |
10259168 |
T |
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