View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16880_low_8 (Length: 352)
Name: NF16880_low_8
Description: NF16880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16880_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 44850796 - 44850474
Alignment:
| Q |
17 |
aaagaactattctttcatgtggttcttatacaaaatgtcatataaacttgagttggaaatgttctaattataagaatgctgtcttacatgcaagatctta |
116 |
Q |
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| T |
44850796 |
aaagaactattctttcatgtggttcttatataaaatgtcatataaacttgagttggaaatgttctaattataagaatgctgtcttacatgcaagatctta |
44850697 |
T |
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| Q |
117 |
gaacatctctaaggccaatttctatgagtaattgtccttatatcaagacatggcttcaatttagcatatatattaactgtgtatttgaaacagtttgttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44850696 |
gaacatctctaaggccaatttctatgagtaattgtccttatatcaagacatggcttcaatttagcatatatattaactgtgtatttgaaacagtttgttt |
44850597 |
T |
|
| Q |
217 |
tgtatttttctgacccagcttgtattagtattgtgtataagctgaatgaatcagtttgttttgtatt---tgagtcacattaagaaacttctttggattc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44850596 |
cgtatttttctgacccagcttgtattagtattgtgtataagctgaatgaatcagtttgttttgtatttgatgagtcacattaagaaacttctttggattc |
44850497 |
T |
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| Q |
314 |
ccttgccacttggaccacaggtt |
336 |
Q |
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||||||||||||||||||||||| |
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| T |
44850496 |
ccttgccacttggaccacaggtt |
44850474 |
T |
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