View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16880_low_9 (Length: 342)
Name: NF16880_low_9
Description: NF16880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16880_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 148 - 330
Target Start/End: Complemental strand, 42716027 - 42715845
Alignment:
| Q |
148 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagcttcattttcagcaagaggaccaaatctcct |
247 |
Q |
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| T |
42716027 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagcatctttttcagcaagaggaccaaatctcgt |
42715928 |
T |
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| Q |
248 |
tgagccaacaatcctcaaggtttagtcttctgttttgaatatgactatcccattttagttgatcttataataactcaatctta |
330 |
Q |
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| T |
42715927 |
tgagccaacaatcctcaaggtttagtcttctattttgaatatgactatcctatattagttgatcttataataacttaatctta |
42715845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 42716156 - 42716082
Alignment:
| Q |
19 |
gtcttatattgatccaaccatccactaatatcaagactgcacgagatttcaacaacattcattccaaaacctttg |
93 |
Q |
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| T |
42716156 |
gtcttatattgatccaaccatccactaatatcaagactgcacgagatttcaacaacattcattccaaaacctttg |
42716082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 42742824 - 42742723
Alignment:
| Q |
148 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagcttcattttcagcaagaggaccaaatctcct |
247 |
Q |
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| T |
42742824 |
gtaggtctcctgtagcttacattactagagttaaaacacaattgggtgtaaaggcatctccatctatagctgcattttcatcaagaggaccaaatatcct |
42742725 |
T |
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| Q |
248 |
tg |
249 |
Q |
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|| |
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| T |
42742724 |
tg |
42742723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 42752183 - 42752082
Alignment:
| Q |
148 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagcttcattttcagcaagaggaccaaatctcct |
247 |
Q |
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||||||||||||| ||||||||| ||| ||| | |||||| |||| | |||| || |||| | ||||||| |||||||| |||||||||||||| |||| |
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| T |
42752183 |
gtaggtctcctgtagcttacattactagagttaaaacacaattgggtgtaaaggcatctccatctatagctgcattttcatcaagaggaccaaatatcct |
42752084 |
T |
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| Q |
248 |
tg |
249 |
Q |
| |
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|| |
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| T |
42752083 |
tg |
42752082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 42761643 - 42761549
Alignment:
| Q |
148 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagcttcattttcagcaagaggaccaaat |
242 |
Q |
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| T |
42761643 |
gtaggtctcctgtagcttacattactagagttaaaacacaattgggtgtaaaggcatctccatctatagctgcattttcatcaagaggaccaaat |
42761549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 42735870 - 42735991
Alignment:
| Q |
148 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagcttcattttcagcaagaggaccaaatctcct |
247 |
Q |
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|||||| ||||||||| |||||| | ||| | |||||| |||| || ||||||| |||| | ||| |||||||||||| ||||||| |||| | ||| |
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| T |
42735870 |
gtaggtttcctgtggcatacattacaggagttaaaacacaattgggtataaagccaactccatctatggcttcattttcatcaagaggcccaagttccct |
42735969 |
T |
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| Q |
248 |
tgagccaacaatcctcaaggtt |
269 |
Q |
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|||||| |||||||||||||| |
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| T |
42735970 |
tgagccttcaatcctcaaggtt |
42735991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 42768507 - 42768447
Alignment:
| Q |
211 |
ttatagcttcattttcagcaagaggaccaaatctccttgagccaacaatcctcaaggttta |
271 |
Q |
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|||| |||||||||||| |||||||||| ||| || |||| ||| |||||||||||||||| |
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| T |
42768507 |
ttatggcttcattttcatcaagaggacctaatatcattgacccatcaatcctcaaggttta |
42768447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 23041580 - 23041681
Alignment:
| Q |
148 |
gtaggtctcctgtggcttacatttctaaagtgacaacacagttggctacaaagccagctccttttatagcttcattttcagcaagaggaccaaatctcct |
247 |
Q |
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||||||||||| | ||||| ||| ||| ||| | |||||| |||| | |||| || |||| | ||||||| |||||||| |||||||||||||| |||| |
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| T |
23041580 |
gtaggtctcctatagcttatattactagagttaaaacacaattgggtgtaaaggcatctccatctatagctgcattttcatcaagaggaccaaatatcct |
23041679 |
T |
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| Q |
248 |
tg |
249 |
Q |
| |
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|| |
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| T |
23041680 |
tg |
23041681 |
T |
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