View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16881_high_1 (Length: 583)
Name: NF16881_high_1
Description: NF16881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16881_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 15 - 582
Target Start/End: Complemental strand, 22629216 - 22628646
Alignment:
| Q |
15 |
atgaacatttaaagcattgtattcaatagtggtgatctcatgcctaaataagtcttttctcaaagttgatggacaatggacattatcaagttgagtagcc |
114 |
Q |
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| T |
22629216 |
atgaacatttaaagcattgtattcaatagtggtgctctaatgcctgaataagtctttgctcaaagttgatggacaatggacattatcaagttgagtagcc |
22629117 |
T |
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| Q |
115 |
ttcaaaggtgaggatgatagattggtctctaatgttgatttgaagccaagtgttaatttacagattgttgttgggttcaacacattactatatgtgatta |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22629116 |
ttcagaggtgaggatgatagattggtctctaatgttgatttgaagccaagagttaatttacagattgttgttgggttcaacacactactatatgtgatta |
22629017 |
T |
|
| Q |
215 |
ttagaataggtggatcaacactaacgttttccacttttaatgatctttttgcacttggaaaccatt-gcactcaggaaacttaagtaaatcaagagagca |
313 |
Q |
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| T |
22629016 |
ttagaataggtggatcaatactaatgttttccacttttaatgatctttttgcacttggaaaccattggaattcaggaaacttaagtaaatcaagagagca |
22628917 |
T |
|
| Q |
314 |
tggcttgtttcatgatggtggaggaaaagatgca--nnnnnnncttgtaacatggatttggatatcagggatagaatctagtcataccttacttctgttt |
411 |
Q |
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| T |
22628916 |
tggcttgtttcatggtggtggaggaaaagatgcatttttttttcctataacagggatttggatatcagggatagaatctagtcataccttatttcttttt |
22628817 |
T |
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| Q |
412 |
ggagcaacaatgaaagaatgaagctcattggacaagtggctataacataagcaccataatgagataacaacgttaaacgagatgatcatacgaattcaat |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22628816 |
ggagcaacaatgaaagaatgaagctcattggacaagtggctataacataacaaccataatgagataacaacgttaaacgagatgatcatacgaattcaat |
22628717 |
T |
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| Q |
512 |
aaattgtctcactatttcattgtccatctaagctttgaatacataagatgtgtgcatgaaattctccattt |
582 |
Q |
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| T |
22628716 |
aaattgtctcactatttcattgtctatctaagctttgaatacataagatgtgttcataaaattctctattt |
22628646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 271
Target Start/End: Complemental strand, 41338782 - 41338584
Alignment:
| Q |
73 |
ctcaaagttgatggacaatggacattatcaagttgagtagccttcaaaggtgaggatgatagattggtctctaatgttgattt-gaagcca-agtgttaa |
170 |
Q |
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|||| |||||||||| |||||| | |||||||||||||| ||||| || ||||||||||||| || || ||||||||| | ||||| | ||| | |
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| T |
41338782 |
ctcacagttgatggatcatggacgtcatcaagttgagtaggcttcagagctgaggatgatagactgcactttaatgttgagtccgaagctggaatgt--a |
41338685 |
T |
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| Q |
171 |
tttacagattgttgttgggttcaacacattactatatgtgattattagaataggtggatcaacactaacgttttccacttttaatgatctttttgcactt |
270 |
Q |
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| T |
41338684 |
tttacaacttgttgttggtttcatcacattactatctttgattattgcaacagttggatcgacactatctttttccactttaaatgatcgttttccactt |
41338585 |
T |
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