View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16881_high_4 (Length: 317)
Name: NF16881_high_4
Description: NF16881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16881_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 42789077 - 42789380
Alignment:
| Q |
1 |
gttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789077 |
gttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggct |
42789176 |
T |
|
| Q |
101 |
gttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatgtgaactctctctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42789177 |
gttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatgtgaactctctctg |
42789276 |
T |
|
| Q |
201 |
catctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggat |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789277 |
catctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggat |
42789376 |
T |
|
| Q |
301 |
gttc |
304 |
Q |
| |
|
|||| |
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| T |
42789377 |
gttc |
42789380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 42798615 - 42798918
Alignment:
| Q |
1 |
gttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798615 |
gttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggct |
42798714 |
T |
|
| Q |
101 |
gttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatgtgaactctctctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42798715 |
gttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatgtgaactctctctg |
42798814 |
T |
|
| Q |
201 |
catctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggat |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798815 |
catctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggat |
42798914 |
T |
|
| Q |
301 |
gttc |
304 |
Q |
| |
|
|||| |
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|
| T |
42798915 |
gttc |
42798918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 304
Target Start/End: Original strand, 34566805 - 34567053
Alignment:
| Q |
56 |
tgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggta |
155 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
34566805 |
tgtgtttgtgaagatattaaggtaaaactcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggta |
34566904 |
T |
|
| Q |
156 |
gaccgagatcttttgagagactataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagagga |
255 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||| || || ||||||||| |||||| ||| |||||||| |||||||||| || ||| || |
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| T |
34566905 |
gaccgagatctttagaaagactataaacaatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtga |
34567004 |
T |
|
| Q |
256 |
attaaacactgatcctgagtagatttcgtctgagataaggtggatgttc |
304 |
Q |
| |
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| || ||||| || ||||||||||||||||||| |||||| |||||| |
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|
| T |
34567005 |
agagaaaactgagcccgagtagatttcgtctgagacaaggtgtatgttc |
34567053 |
T |
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