View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16881_low_2 (Length: 529)

Name: NF16881_low_2
Description: NF16881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16881_low_2
NF16881_low_2
[»] chr4 (1 HSPs)
chr4 (32-529)||(27692628-27693125)
[»] chr1 (15 HSPs)
chr1 (236-380)||(9464469-9464613)
chr1 (236-374)||(8921053-8921191)
chr1 (440-529)||(8956231-8956320)
chr1 (236-376)||(8942372-8942512)
chr1 (236-376)||(8964867-8965007)
chr1 (236-376)||(9104606-9104746)
chr1 (236-372)||(9488909-9489045)
chr1 (236-297)||(9233674-9233735)
chr1 (473-525)||(8942229-8942281)
chr1 (256-363)||(8873703-8873810)
chr1 (426-525)||(8932313-8932412)
chr1 (236-374)||(8932458-8932596)
chr1 (237-315)||(8956439-8956517)
chr1 (473-529)||(9233905-9233961)
chr1 (236-376)||(9320257-9320397)


Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 32 - 529
Target Start/End: Complemental strand, 27693125 - 27692628
Alignment:
Q  32 catttatctatagatgacatggttgaggattttattcagagtcacaacaatttcatgcccataaggtactcttactctcaaattaaaactatgaccaaac 131  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27693125 catttatctatagatgacatggttgaagattttattcagagtcacaacaatttcatgcccataaggtactcttactctcaaattaaaactatgaccaaac 27693026  T
Q  132 atttcaaacataagttgggtgaaggaggctatggttcagtctatgaaggagtgttacgaagcaaacgcaaagtagctgttaaggtattgaataagtctca 231  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  ||||||||    
T  27693025 atttcaaacataagttgggtgaaggaggctacggttcagtctatgaaggagtgtcacgaagcaaacacaaagtagctgttaaggtattgaccaagtctca 27692926  T
Q  232 aaccaatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaag 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  27692925 aaccaatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaacgtggtgcaactggttggattctgtgctgaaagaacaaag 27692826  T
Q  332 caagctctggtttacgagttcatgcctaatggttctcttgataaacacacgttttcacaagagcaaggacacttgtcgtcgttaagctatgagaaaattt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |    
T  27692825 caagctctggtttacgagttcatgcctaatggttctcttgataaacacatgttttcacatgagcaaggacacttgtcgtcgttaagctacgagaaaatct 27692726  T
Q  432 acgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattctt 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692725 acgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattctt 27692628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 380
Target Start/End: Complemental strand, 9464613 - 9464469
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 335  Q
    |||||||| || ||||||||||||||||| ||||||||||  ||||  ||||| |||||||| || ||  |||| |||||||  || | ||||||   ||    
T  9464613 aatggacaggaattcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagag 9464514  T
Q  336 ctctggtttacgagttcatgcctaatggttctcttgataaacaca 380  Q
    | || ||||| |||||||||||||| | ||||||||| |||||||    
T  9464513 cacttgtttatgagttcatgcctaacgattctcttgaaaaacaca 9464469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 374
Target Start/End: Complemental strand, 8921191 - 8921053
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 335  Q
    ||||| ||||| ||||| ||||||||||||||||| |||| ||| | ||| |  |||||||||| ||| |||||||||||||  ||  || |||| |  |    
T  8921191 aatgggcaagatttcattaatgaagttgcaaccataggaaaaatacatcacgccaatgtggtgcgacttgttggattttgtgttgagggatcaaaacgtg 8921092  T
Q  336 ctctggtttacgagttcatgcctaatggttctcttgata 374  Q
    |||| ||||| || |||||||| ||||| ||||||||||    
T  8921091 ctcttgtttatgatttcatgccaaatggctctcttgata 8921053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 529
Target Start/End: Complemental strand, 8956320 - 8956231
Alignment:
Q  440 tctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattctt 529  Q
    ||||||||| || | |||||||||   || || |||||||||||||||||||||||  |||| |||||||| || |||||||||||||||    
T  8956320 tctcttggagttgcacgtggaattgcttatttgcatcaaggttgtgacatgcaaattttacattttgatatcaagcctcataacattctt 8956231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 8942512 - 8942372
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 335  Q
    ||||| ||||| |||||||||||||||||||| || |||||||| | |||    |||||||||| |||  ||||||||||||  ||  || ||||   ||    
T  8942512 aatgggcaagatttcatcaatgaagttgcaacaataggaagaatacatcacaccaatgtggtgcgacttattggattttgtgttgagggatcaaaaagag 8942413  T
Q  336 ctctggtttacgagttcatgcctaatggttctcttgataaa 376  Q
    |||| ||||| || |||||||| ||||| ||||||||||||    
T  8942412 ctcttgtttatgatttcatgcccaatggctctcttgataaa 8942372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 8965007 - 8964867
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 335  Q
    ||||| || ||||| || |||||||| |||||||||||||| || | |||| |||||||||||||| |  |||| ||||||| |||  || |||| |  |    
T  8965007 aatgggcaggactttattaatgaagtagcaaccattggaaggatacatcatttgaatgtggtgcaattaattggtttttgtgtcgagggatcaaaccgtg 8964908  T
Q  336 ctctggtttacgagttcatgcctaatggttctcttgataaa 376  Q
    |||| ||||| || |||||| ||||||| || |||||||||    
T  8964907 ctcttgtttatgaattcatgtctaatggatcccttgataaa 8964867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 376
Target Start/End: Original strand, 9104606 - 9104746
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 335  Q
    |||||||||||||| || | |||||| |||||||||||||| || | |||| ||||||| || ||| |  |||||||||||   ||  || |||| |  |    
T  9104606 aatggacaagactttattagtgaagtagcaaccattggaaggatacatcatttgaatgtagtacaattatttggattttgtattgagggatcaaaacgtg 9104705  T
Q  336 ctctggtttacgagttcatgcctaatggttctcttgataaa 376  Q
    |||| ||||| || |||||||||||||| ||||||||||||    
T  9104706 ctcttgtttatgaattcatgcctaatggatctcttgataaa 9104746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 372
Target Start/End: Complemental strand, 9489045 - 9488909
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 335  Q
    |||||||| || ||||||||||||||||| || |||||||  ||||  ||||| || ||||| || ||  |||| |||||||  || | ||||||   ||    
T  9489045 aatggacaggaattcatcaatgaagttgctacgattggaacgattcaccatgttaacgtggttcacctaattggcttttgtgttgagaaaacaaaaagag 9488946  T
Q  336 ctctggtttacgagttcatgcctaatggttctcttga 372  Q
    | || ||||| ||||||||||||||||||||||||||    
T  9488945 cacttgtttatgagttcatgcctaatggttctcttga 9488909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 9233674 - 9233735
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggt 297  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| | |||||| ||||||||    
T  9233674 aatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggt 9233735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 525
Target Start/End: Complemental strand, 8942281 - 8942229
Alignment:
Q  473 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacat 525  Q
    |||||||||||||||||||||||  |||| |||||||| || |||||||||||    
T  8942281 catcaaggttgtgacatgcaaattttacattttgatatcaagcctcataacat 8942229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 8873703 - 8873810
Alignment:
Q  256 tgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaagctctggtttacgagttcatg 355  Q
    |||||| ||||||||||| ||||| | |||| |||||||||||||| |  ||||||||||  ||||  || |||| |  ||||| ||||| ||||| |||    
T  8873703 tgaagtagcaaccattgggagaatacatcatttgaatgtggtgcaattaattggattttgcaccgagggatcaaaacgtgctcttgtttatgagtttatg 8873802  T
Q  356 cctaatgg 363  Q
    ||||||||    
T  8873803 cctaatgg 8873810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 525
Target Start/End: Complemental strand, 8932412 - 8932313
Alignment:
Q  426 aaatttacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacat 525  Q
    |||| ||||| || ||||||||| || | |||||||||   || || |||||||||||||||||||||||  |||| || ||||| || |||||||||||    
T  8932412 aaatgtacgagatatctcttggagttgcacgtggaattgcttatttgcatcaaggttgtgacatgcaaattttacatttcgatatcaagcctcataacat 8932313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 374
Target Start/End: Complemental strand, 8932596 - 8932458
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 335  Q
    ||||||||||| ||||| | |||||||||||| || |||| ||| | |||    |||||||||| ||| |||||||||||||  || | | |||| |  |    
T  8932596 aatggacaagatttcattagtgaagttgcaactataggaaaaatacatcacaccaatgtggtgcgacttgttggattttgtgttgagaaatcaaaacgtg 8932497  T
Q  336 ctctggtttacgagttcatgcctaatggttctcttgata 374  Q
    |||| ||||| || |||||||| ||||| ||||||||||    
T  8932496 ctcttgtttatgatttcatgcccaatggctctcttgata 8932458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 8956517 - 8956439
Alignment:
Q  237 atggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttg 315  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||| | |||    |||||||||| ||| |||||||||||    
T  8956517 atggacaagatttcattaatgaagttgcaaccataggaaaaatacatcacaccaatgtggtgcgacttgttggattttg 8956439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 9233905 - 9233961
Alignment:
Q  473 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattctt 529  Q
    |||||||||||||| ||||||||  |||| |||||||| || |||||||| ||||||    
T  9233905 catcaaggttgtgatatgcaaattctacattttgatatcaagcctcataatattctt 9233961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 9320397 - 9320257
Alignment:
Q  236 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 335  Q
    ||||||||||| ||||| | |||||| |||||||| |||||||| | |||    |||||||| | |||  |||| |||||||  ||| || ||||||  |    
T  9320397 aatggacaagatttcattagtgaagtcgcaaccataggaagaatacatcacaccaatgtggttcgacttattgggttttgtgttgaaggatcaaagcgtg 9320298  T
Q  336 ctctggtttacgagttcatgcctaatggttctcttgataaa 376  Q
    |||| ||||| || |||||| | ||||| ||||||||||||    
T  9320297 ctcttgtttatgaattcatgtccaatggctctcttgataaa 9320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University