View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16881_low_3 (Length: 460)
Name: NF16881_low_3
Description: NF16881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16881_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 245 - 444
Target Start/End: Complemental strand, 47661368 - 47661169
Alignment:
| Q |
245 |
tttacagttagccttgagagcttatctccaacacgaagtcagaaaaggaccatgacacataaatgcgagtataatgtaaaagacgatggcaaaaatcata |
344 |
Q |
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| T |
47661368 |
tttacagttagccttgagagcttatctccaacacgaagtcagaaaaggaccatgacacataaatgcgagtataatgtaaaagacgatggcaaaaatcata |
47661269 |
T |
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| Q |
345 |
atgagtgtaaccctgcataaagaagagatgaagaaacattagaaatttaaatttaaataatcaaaaagcttaacctcaacgtttcgaaattgacacttac |
444 |
Q |
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| T |
47661268 |
atgagtgcaaccctgcataaagaagagatgaagaaacattagaaatttaaatttaaataatcaaaaagcttaacctcaacgtttagaaattgacacttac |
47661169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 47661608 - 47661397
Alignment:
| Q |
3 |
tcgagtgagatgaagggaacaatagggaaaaaattacagtgttcctttagaattgtaaatatacccatacaatagggtatcttgcaatgcaaactcatcc |
102 |
Q |
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| T |
47661608 |
tcgagtgaaatgaagggaacaatagggaaaaaatta--gtgttccttcagaattgtaaatatacccatacaatagggtatcttgcaatgcaaactcatcc |
47661511 |
T |
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| Q |
103 |
acattgcgtaacatttttctaaaacgtgcactatcctaaaacggtaacattgcatcccaataaatacaagtatgaatatttcttttttctttgacccagt |
202 |
Q |
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| T |
47661510 |
acattgcgtaacaattttctaaaacgtgcactagcctaaaacggtaacattgcatcccaataaatacaagtatgaatatttcttttttctttgacccagt |
47661411 |
T |
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| Q |
203 |
atacattattggtc |
216 |
Q |
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| T |
47661410 |
atacattattggtc |
47661397 |
T |
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