View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16881_low_4 (Length: 415)
Name: NF16881_low_4
Description: NF16881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16881_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 399
Target Start/End: Original strand, 35073018 - 35073395
Alignment:
| Q |
21 |
tcatatccatggtccatccaaattttattttctctaaaatttaatcaaccgttctagatgtagttctagtttctagaaacaaaaataggtaatgactgca |
120 |
Q |
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| T |
35073018 |
tcatatccatggtccatccaaattttattttctctaaaatttaatcaaccgttctagatgtagttcttgtttctagaaacaaaaataggtaatgactgca |
35073117 |
T |
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| Q |
121 |
taacaacctacaagcgtacacgtgtcatatagaactaaaaccttgtttgatctccacgtgtcaatatcataacacgtgatacgtgttaacgaagcaagca |
220 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073118 |
taacaacctacaagcgtacacgtgtcatatagaa-ttaaaccttgtttgatctccacgtgtcaatatcataacacgtgatacgtgttaacgaagcaagca |
35073216 |
T |
|
| Q |
221 |
tgaaaataaacattcataatttcacacaccacctnnnnnnnnnnnnnnntaaccttttttctaatctcttctgtttagatttgagtttgagcgccgaagg |
320 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073217 |
tgaaaataaacattcataatttcatacaccacctacaaaaaaataaaaataaccttttttctaatctcttctgtttagatttgagtttgagcgccgaagg |
35073316 |
T |
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| Q |
321 |
agacgatttatttaagctcacacacaccaaacttcaccaagataagtatattaccttacccaattggttactgtttcat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35073317 |
agacgatttatttaagctcacacacaccaaacttcaccaagataagtatattaccttaccgaattggttactgtttcat |
35073395 |
T |
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