View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16882_high_1 (Length: 414)
Name: NF16882_high_1
Description: NF16882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16882_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 37859624 - 37859237
Alignment:
| Q |
10 |
catcatcatcaacaatgaatgtgnnnnnnntgacacaaaatctagctggagtttccttcaagctttaacagaaactaacaaaactgaaaatgcaaatggt |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37859624 |
catcatcatcaacaatgaatgtgaaaaaaatgacacaaaatctagctggagtttccttcaagctttaacagaaactaacaaaattgaaaatgcaaatggt |
37859525 |
T |
|
| Q |
110 |
aaagtctatgttcatcctactgtgaaacgttcctcatcaatgctaagtgaaaagagcttagaaatgtgcactgaaagccttgggagtgaaactggtagca |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859524 |
aacgtctatgttcatcctactgtgaaacgttcctcatcaatgctaagtgaaaagagcttagaaatgtgcactgaaagccttgggagtgaaactggtagca |
37859425 |
T |
|
| Q |
210 |
atgctggtgaaagtagtgatattgatgtttcattattttcttctgacacaagaaatgatgttaacaataacaacatgaataattgtgtgtctagaagagt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859424 |
atgctggtgaaagtagtgatattgatgtttcattattttcttctgacacaagaaatgatgttaacaataacaacatgaataattgtgtgtctagaagagt |
37859325 |
T |
|
| Q |
310 |
taataaagcttcttgtaactttcctccaccactcacatcaataactgattttggtggtgttcatgttaggcctcatcgcgaaggtggt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859324 |
taataaagcttcttgtaactttcctccaccactcacttcaataactgattttggtggtgttcatgttaggcctcatcgcgaaggtggt |
37859237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University