View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16882_low_3 (Length: 209)

Name: NF16882_low_3
Description: NF16882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16882_low_3
NF16882_low_3
[»] chr4 (3 HSPs)
chr4 (53-202)||(13774684-13774833)
chr4 (55-186)||(24907736-24907867)
chr4 (106-202)||(45162654-45162750)
[»] chr3 (2 HSPs)
chr3 (53-202)||(4531368-4531517)
chr3 (55-202)||(18965753-18965900)
[»] chr7 (8 HSPs)
chr7 (53-202)||(8733028-8733177)
chr7 (53-202)||(19787284-19787433)
chr7 (53-202)||(16534670-16534819)
chr7 (53-202)||(16630843-16630992)
chr7 (83-202)||(3933161-3933280)
chr7 (53-162)||(21768760-21768869)
chr7 (106-184)||(42680410-42680488)
chr7 (106-181)||(3052677-3052752)
[»] chr5 (3 HSPs)
chr5 (53-200)||(11851720-11851867)
chr5 (53-198)||(15469435-15469579)
chr5 (106-202)||(37208371-37208467)
[»] scaffold0050 (1 HSPs)
scaffold0050 (83-202)||(29793-29912)
[»] scaffold0045 (2 HSPs)
scaffold0045 (69-202)||(64356-64488)
scaffold0045 (69-202)||(71688-71820)
[»] chr1 (2 HSPs)
chr1 (55-202)||(2409521-2409668)
chr1 (106-184)||(10909587-10909665)
[»] chr6 (1 HSPs)
chr6 (58-199)||(20642615-20642756)
[»] scaffold0008 (1 HSPs)
scaffold0008 (106-202)||(88821-88917)
[»] chr8 (1 HSPs)
chr8 (106-202)||(36379094-36379190)
[»] chr2 (2 HSPs)
chr2 (106-202)||(31487344-31487440)
chr2 (106-184)||(42277408-42277486)
[»] scaffold1361 (1 HSPs)
scaffold1361 (106-184)||(415-493)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 13774684 - 13774833
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||||| |||||||| || ||| ||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  13774684 ttgtcaaaatgccacctagaagacaaaacgaaagatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaa 13774783  T
Q  153 cgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
     |||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  13774784 agtccaacaagccttattggaagcaaaccaaagaagatttgatgatgatg 13774833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 24907867 - 24907736
Alignment:
Q  55 gtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaacg 154  Q
    |||||||||| ||||||||||| |||||| |||||||| |||||||| || ||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  24907867 gtcaaaatgccacctagaaaacaaaatgagagatctttgcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaagagaccgtcaacg 24907768  T
Q  155 tccaacaagccttattgaaagcacaacaaaga 186  Q
     ||||| | |||||||| ||||||||| ||||    
T  24907767 cccaacgaaccttattggaagcacaacgaaga 24907736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 45162654 - 45162750
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
    ||||||||||||||| ||||||||||   |||||| |||||  |||| |  ||||| ||| ||||| ||||||||| ||| ||| ||||||||||||    
T  45162654 atggaagaaatgaggcgacaaattcaggaactacaagagaccatcaatgctcaacaggccatattggaagcacaacgaaggagagttgatgatgatg 45162750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 4531368 - 4531517
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||||| |||||||| || ||| ||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  4531368 ttgtcaaaatgccacctagaagacaaaacgaaagatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaa 4531467  T
Q  153 cgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
     |||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  4531468 agtccaacaagccttattggaagcaaaccaaagaagatttgatgatgatg 4531517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 18965900 - 18965753
Alignment:
Q  55 gtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaacg 154  Q
    |||||||||| ||| | ||||| |||  |||||  ||| |||||||| || ||||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  18965900 gtcaaaatgccaccaaaaaaacaaaaccaaagacgtttgcatgaaattgagatggaagaaatgaggcgacaaattcaactactccaggaaactgtcaacg 18965801  T
Q  155 tccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
     ||||||||  |||||| ||||| |||||||||||  |||||||||||    
T  18965800 cccaacaagtattattggaagcataacaaagaagaaatgatgatgatg 18965753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 4e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 53 - 202
Target Start/End: Complemental strand, 8733177 - 8733028
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||||| |||||||| || ||| ||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||    
T  8733177 ttgtcaaaatgccacctagaagacaaaacgaaagatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactataggagactgtcaa 8733078  T
Q  153 cgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
     |||||||||||||||||| ||| | | ||||||||||||||||||||||    
T  8733077 agtccaacaagccttattggaagaaaaccaaagaagatttgatgatgatg 8733028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 19787284 - 19787433
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||| | |||||||| || ||| ||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  19787284 ttgtcaaaataccacctagaagacaaaacgaaagatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaa 19787383  T
Q  153 cgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
     |||||||||||||||||| ||| | | ||||||||||||||||||||||    
T  19787384 agtccaacaagccttattggaagaaaaccaaagaagatttgatgatgatg 19787433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 53 - 202
Target Start/End: Complemental strand, 16534819 - 16534670
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||||| |||||||| |  ||| ||||||||||| ||||||||  | ||||||||||||||| |||||||||||||||||||||||||||||||    
T  16534819 ttgtcaaaatgccacctagaagaaaaaacgaaagatcttttcatgaaatttagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaa 16534720  T
Q  153 cgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
     ||||||||| |||||||| ||||| | ||||||| ||||||||||||||    
T  16534719 agtccaacaaaccttattggaagcaaaccaaagaatatttgatgatgatg 16534670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 16630843 - 16630992
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||||| |||||||| |  ||| ||||||||||| ||||||||  | ||||||||||||||| |||||||||||||||||||||||||||||||    
T  16630843 ttgtcaaaatgccacctagaagaaaaaacgaaagatcttttcatgaaatttagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaa 16630942  T
Q  153 cgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
     ||||||||| |||||||| ||||| | ||||||| ||||||||||||||    
T  16630943 agtccaacaaaccttattggaagcaaaccaaagaatatttgatgatgatg 16630992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 3933161 - 3933280
Alignment:
Q  83 aaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaaca 182  Q
    |||||||||  | |||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| ||    
T  3933161 aaagatcttctcttgaaattgaaatggaagaaatgaggcgacaaattcaattactacaggagactgtcaatgtccaacaaaccttattgaaagcacacca 3933260  T
Q  183 aagaagatttgatgatgatg 202  Q
    ||||||||||||||||||||    
T  3933261 aagaagatttgatgatgatg 3933280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 21768869 - 21768760
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||||| || |||||||| ||| |||| |||||| || ||||| || ||||||||||| ||  ||||| |||||||||  ||| ||||||||||    
T  21768869 ttgtcaaaatgccacatagaaaacaaaacgaaatatctttgcaagaaattgagatggaagaaattagtcgacaagttcaactacagcagaagactgtcaa 21768770  T
Q  153 cgtccaacaa 162  Q
    || |||||||    
T  21768769 cgcccaacaa 21768760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 42680488 - 42680410
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaa 184  Q
    |||||| |||||||| |||||||||||| |||||| |||| |||||| | |||||||||| | ||| ||||||||||||    
T  42680488 atggaaaaaatgaggcgacaaattcaacaactacaagagattgtcaatgcccaacaagcccttttggaagcacaacaaa 42680410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 3052677 - 3052752
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaac 181  Q
    |||||||||||| || ||||||||||||| || ||| |||||||||| | ||||||| | |||||| |||||||||    
T  3052677 atggaagaaatgtggcgacaaattcaactgctccagaagactgtcaatgcccaacaatcattattggaagcacaac 3052752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 11851867 - 11851720
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||||| |||||||| |  ||| |||| |||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  11851867 ttgtcaaaatgccacctagaagaaaaaacgaaatatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaggagactatcaa 11851768  T
Q  153 cgtccaacaagccttattgaaagcacaacaaagaagatttgatgatga 200  Q
    | || |||||||||||||| ||||| | ||||||||||||||||||||    
T  11851767 catcaaacaagccttattggaagcaaaccaaagaagatttgatgatga 11851720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 53 - 198
Target Start/End: Original strand, 15469435 - 15469579
Alignment:
Q  53 ttgtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaa 152  Q
    |||||||||||| | ||||||||| ||||||||||  ||| || ||||| || ||||||  ||| ||| ||||||||||||||||||| |||| | ||||    
T  15469435 ttgtcaaaatgccaactagaaaac-aaatgaaagaaatttgcaagaaattgatatggaatgaattaggcgacaaattcaactactacaagagattttcaa 15469533  T
Q  153 cgtccaacaagccttattgaaagcacaacaaagaagatttgatgat 198  Q
    || |||||||||||||||| |||||||||   || |||||||||||    
T  15469534 cgcccaacaagccttattggaagcacaacggggacgatttgatgat 15469579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 37208371 - 37208467
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
    ||||||||||||||| ||||||||||   |||||| ||||| ||||| | |||||| ||| ||||| ||||||||| ||||||| ||||||||||||    
T  37208371 atggaagaaatgaggcgacaaattcaggaactacaagagaccgtcaatgcccaacatgccatattggaagcacaacgaagaagagttgatgatgatg 37208467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 29793 - 29912
Alignment:
Q  83 aaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaaca 182  Q
    ||||| |||| |||||||| || ||||||||||||||| |||| ||||||||||| ||||| |||||||||| ||||||||| |||||| |||||||||     
T  29793 aaagacctttgcatgaaattgagatggaagaaatgaggcgacagattcaactactccaggaaactgtcaacgcccaacaagcattattggaagcacaacg 29892  T
Q  183 aagaagatttgatgatgatg 202  Q
    |||||||  ||| |||||||    
T  29893 aagaagaaatgacgatgatg 29912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 64356 - 64488
Alignment:
Q  69 tagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagcctta 168  Q
    |||||||| ||| |||||||||||  |||||||  | ||||||||||||||| |  |||| ||||||  |||||||| |||||||  |||||||||||||    
T  64356 tagaaaacaaaacgaaagatctttgtatgaaatt-agatggaagaaatgaggcggaaaatccaactaacacaggagagtgtcaacacccaacaagcctta 64454  T
Q  169 ttgaaagcacaacaaagaagatttgatgatgatg 202  Q
    ||| ||||||||| |||||||||||||| |||||    
T  64455 ttggaagcacaacgaagaagatttgatgttgatg 64488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 71688 - 71820
Alignment:
Q  69 tagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagcctta 168  Q
    |||||||| ||| |||||||||||  |||||||  | ||||||||||||||| |  |||| ||||||  |||||||| |||||||  |||||||||||||    
T  71688 tagaaaacaaaacgaaagatctttgtatgaaatt-agatggaagaaatgaggcggaaaatccaactaacacaggagagtgtcaacacccaacaagcctta 71786  T
Q  169 ttgaaagcacaacaaagaagatttgatgatgatg 202  Q
    ||| ||||||||| |||||||||||||| |||||    
T  71787 ttggaagcacaacgaagaagatttgatgttgatg 71820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 2409668 - 2409521
Alignment:
Q  55 gtcaaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaacg 154  Q
    |||||||||| |||| ||||||  |||| ||||  ||| || || || || ||||||||||||||| || |||||||   |||||| ||||||||||| |    
T  2409668 gtcaaaatgccacctcgaaaacagaatgcaagaggtttgcaagagatggagatggaagaaatgaggcgataaattcaggaactacaagagactgtcaatg 2409569  T
Q  155 tccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
     |||||||||| ||||| ||||||||  ||||||| ||||||||||||    
T  2409568 cccaacaagccatattggaagcacaatgaagaagagttgatgatgatg 2409521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 10909587 - 10909665
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaa 184  Q
    |||||| |||||||| |||||||||||| |||||| |||| |||||| | |||||||||| | ||| ||||||||||||    
T  10909587 atggaaaaaatgaggcgacaaattcaacaactacaagagattgtcaatgcccaacaagcccttttggaagcacaacaaa 10909665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 199
Target Start/End: Original strand, 20642615 - 20642756
Alignment:
Q  58 aaaatgctacctagaaaaccaaatgaaagatctttccatgaaatagaaatggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtcc 157  Q
    ||||||| |||| ||| || ||||||||||  ||| || || || || ||||||||||||||| |||||||||||| ||| || |||||  |||| | ||    
T  20642615 aaaatgccacctcgaagacaaaatgaaagaagtttgcaagagatggagatggaagaaatgaggcgacaaattcaacaactgcaagagaccatcaatgccc 20642714  T
Q  158 aacaagccttattgaaagcacaacaaagaagatttgatgatg 199  Q
    |||||||| | ||| ||||||||| || ||||||||||||||    
T  20642715 aacaagcccttttggaagcacaacgaataagatttgatgatg 20642756  T

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Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 88821 - 88917
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
    ||||||||||||||| ||||||||||   |||||| |||||  |||| | |||||| ||| ||||| ||||||||| ||||||| ||||||||||||    
T  88821 atggaagaaatgaggcgacaaattcaggaactacaagagaccatcaatgcccaacaggccatattggaagcacaacgaagaagagttgatgatgatg 88917  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 36379190 - 36379094
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
    ||||||||||||||| ||||||||||   |||||| ||||| ||||| | |||||| ||| ||||| ||||| ||| ||||||| ||||||||||||    
T  36379190 atggaagaaatgaggcgacaaattcaggaactacaagagaccgtcaatgcccaacaggccatattggaagcagaacgaagaagagttgatgatgatg 36379094  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 31487344 - 31487440
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaagaagatttgatgatgatg 202  Q
    ||||||||||||||| ||||||||||   |||||| ||||| ||||| | |||||| ||| ||||| ||||| ||| ||||||| ||||||||||||    
T  31487344 atggaagaaatgaggcgacaaattcaggaactacaagagaccgtcaatgcccaacaggccatattggaagcagaacgaagaagagttgatgatgatg 31487440  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 42277486 - 42277408
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaa 184  Q
    |||||| |||||||| |||||||||||| |||||| |||| |||||| | |||||||||| | ||| ||||||||||||    
T  42277486 atggaaaaaatgaggcgacaaattcaacaactacaagagattgtcaatgcccaacaagcccttttggaagcacaacaaa 42277408  T

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Target: scaffold1361 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 415 - 493
Alignment:
Q  106 atggaagaaatgaggtgacaaattcaactactacaggagactgtcaacgtccaacaagccttattgaaagcacaacaaa 184  Q
    |||||| |||||||| || ||||||||| |||||| |||| |||||| | |||||||||| | ||| ||||||||||||    
T  415 atggaaaaaatgaggcgataaattcaacaactacaagagattgtcaatgcccaacaagcccttttggaagcacaacaaa 493  T

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