View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16883_high_2 (Length: 426)
Name: NF16883_high_2
Description: NF16883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16883_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 32 - 395
Target Start/End: Original strand, 45340782 - 45341145
Alignment:
| Q |
32 |
cactcttcaaacgcatactacagatgaaactgagagtggatagagataggtattagcatactggaaagaaacagtgccaccattgactaatggtctacca |
131 |
Q |
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| T |
45340782 |
cactcttcaaacgcatactacagatgaaactgagagtggatagagataggtattagcatactggaaagaaacagtgccaccattgactaatggtctacca |
45340881 |
T |
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| Q |
132 |
tcattgacaaggcagtcattgtaacggaggcgtttgaagagcttagggttgatgagacgtgctgagctgaaccagccacatcgaagatgaatagcagaaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45340882 |
tcattgacaaggcagtcattgtaacggaggcgtttgaagagcttagggttgatgagacgtgctgagctgaaccagccacatcgaagatgaatagcagaaa |
45340981 |
T |
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| Q |
232 |
tgtcacatccacttacacacatgttcatgatttcaactgtgtatgttggtataccacttgggagtggtgctgttgagccttgattgataacaatatcaga |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45340982 |
tgtcacatccacttacacacatgttcatgatttcaactgtgtatgttggtataccacttgggagtggtgctgttgagccttgattgataacaatatcaga |
45341081 |
T |
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| Q |
332 |
tttgctgcattttttgtcaccccatattcggtttggttccaacctctcagttgctgcacaattg |
395 |
Q |
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| T |
45341082 |
tttgctgcattttttgtccccccatattcggtttggttccaacctctcagttgctgcacaattg |
45341145 |
T |
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