View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16883_high_6 (Length: 361)
Name: NF16883_high_6
Description: NF16883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16883_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 3598913 - 3598564
Alignment:
| Q |
1 |
taaactcttcaacacgtccatttgtaaaacgtccaagcagacgtggtccctgaccattctttgacatgtactcaaatgtccgtatttcatcatccctatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598913 |
taaactcttcaacacgtccatttgtaaaacgtcctagtagacgtggtccctgaccattctttgacatgtactcaaatgtccgtatttcatcatccctatc |
3598814 |
T |
|
| Q |
101 |
aaagaaaatttccacaccctccccgtagatcctaacaagaacttttcgtgaggtttcctcagttgtagctggccactttatttcaaatacctcatttgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598813 |
aaagaaaatttccacaccctccccgtagatcctaacaagaacttttcgtgaggtttcctcagttgtagctggccactttatttcaaatacctcatttgtc |
3598714 |
T |
|
| Q |
201 |
attgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccatttacctgctaatgatatcagaatctcctttgcttcttctggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598713 |
attgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccatttacctgctaatgatatcagaatctcctttgcttcttctggaa |
3598614 |
T |
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| Q |
301 |
ggcggtcagctttgctgcttacaggggtttctatggcatctggtttctct |
350 |
Q |
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| T |
3598613 |
ggcggtcagctttgctgcttacaggggtttctatggcatctggtttctct |
3598564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 301
Target Start/End: Original strand, 15547148 - 15547413
Alignment:
| Q |
36 |
agcagacgtggtccctgaccattctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaa |
135 |
Q |
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|||| ||| |||||||| ||||||||||| ||| | | ||||| || ||||| | ||||||||||||||||| || ||| || || ||||| |||| |
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| T |
15547148 |
agcaaacgaggtccctgtccattctttgatatgaatgcgaatgttcgaatttcgttttccctatcaaagaaaatgtcagtaccttcaccatagattctaa |
15547247 |
T |
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| Q |
136 |
caagaacttttcgtgaggtttcctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatt |
235 |
Q |
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||||||| |||| ||| |||| | ||| | | |||| ||||| | ||||||||||| ||||||||||| || ||||| || || | ||| |||| |
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| T |
15547248 |
caagaacctttcttgacatttcaccttctgttgtttgccattttatctggaatacctcattggtcattgcccctttaagaggaataacttccaactcatt |
15547347 |
T |
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| Q |
236 |
tgcatctagtacatcctcccatttacctgctaatgatatcagaatctcctttgcttcttctggaag |
301 |
Q |
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|||||| | ||||| ||||||||| |||||||||| ||| ||||| |||||||| |||||||| |
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| T |
15547348 |
tgcatccaatacattttcccatttatttgctaatgatttcaatatctcttttgcttcatctggaag |
15547413 |
T |
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