View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16884_high_2 (Length: 253)
Name: NF16884_high_2
Description: NF16884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16884_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 34687025 - 34687250
Alignment:
| Q |
19 |
ctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatgga |
118 |
Q |
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| T |
34687025 |
ctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatgga |
34687124 |
T |
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| Q |
119 |
atctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtg |
218 |
Q |
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| T |
34687125 |
atctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtg |
34687224 |
T |
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| Q |
219 |
tcacgacaacttcaagtaatgatgat |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34687225 |
tcacgacaacttcaagtaatgatgat |
34687250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 34694981 - 34695176
Alignment:
| Q |
49 |
acctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatggaatctactcagtccatgatcttttttatcaa |
148 |
Q |
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| T |
34694981 |
acctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaa |
34695080 |
T |
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| Q |
149 |
gagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatgat |
244 |
Q |
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| T |
34695081 |
gagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgat |
34695176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 8285050 - 8285151
Alignment:
| Q |
144 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
243 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||| | ||||| ||||| |||||||| |
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| T |
8285050 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
8285149 |
T |
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| Q |
244 |
tg |
245 |
Q |
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|| |
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| T |
8285150 |
tg |
8285151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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