View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16884_low_1 (Length: 620)
Name: NF16884_low_1
Description: NF16884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16884_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 16 - 608
Target Start/End: Original strand, 34140257 - 34140844
Alignment:
| Q |
16 |
tcagctgggatgagagaaggtggtaggacaggattaacggctgtgatcatcgggttgtttttctttttgtcattgtttttcactcctttgttgtcaagtg |
115 |
Q |
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| T |
34140257 |
tcagctgggatgagagaaggtggtaggacaggattaacggctgtgatcatcgggttgtttttctttttgtcattgtttttcactcctttgttgtcaagtg |
34140356 |
T |
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| Q |
116 |
ttcctccatgggctataggtccttcactagtgatggttggggtaatgatgatgaaagttgtgaaggatattgactggactaatataaaggaagcagttcc |
215 |
Q |
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| T |
34140357 |
ttcctccatgggctataggtccttcactagtgatggttggggtaatgatgatgaaagttgtgaaggatattgactggactaatataaaggaagcagttcc |
34140456 |
T |
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| Q |
216 |
tgcttttgctataatgattttaatgcctctaacttattccatagcaaatggtattgttgctggtattggtctttatgttgctcttagtctttttgactat |
315 |
Q |
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| T |
34140457 |
tgcttttgctataatgattttaatgcctctaacttattccatagcaaatggtattgttgctggtattggtctttatgttgctcttagtctttttgactat |
34140556 |
T |
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| Q |
316 |
gctgcaagcatcataaattggttggggaaaatgaggagaaggatgatcaaggagcataatcaagtgtcggccactgcaacaacaggtgttgactcaaact |
415 |
Q |
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| T |
34140557 |
gctgcaagcatcataaattggttggggaaaatgaggagaaggatgatcaaggagcataatcaagtgtcggccactgcaacaacaggtgttgactcaaact |
34140656 |
T |
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| Q |
416 |
caatagtggaaatcatttgaaatgctctggttggtttggttgtcaatttttgacttttagggtattggtaagatcttgcttgtagatttttgctgctaaa |
515 |
Q |
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| T |
34140657 |
caatagtggaaatcatttgaaatgctctggttggtttggttgtcaatttttgacttttagggtattggtaagatcttgcttgtagatttttgctgctaaa |
34140756 |
T |
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| Q |
516 |
tgtataggctactagttataagacctatgcagacacaagataaattgcattcgcaacagtattattagtagtatagcagttatggtggttttg |
608 |
Q |
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| T |
34140757 |
tgtataggctactagttataagacctatgcagacacaagataaattgcattcacaacagtattagtag-----tagcagttatggtggttttg |
34140844 |
T |
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