View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16884_low_2 (Length: 391)
Name: NF16884_low_2
Description: NF16884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16884_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 2032599 - 2032967
Alignment:
| Q |
15 |
tacatttacttgtatacacacagcaacagtaatttctagggtgcctctnnnnnnncactaa-ttttttagggtgataacatattttcttatcattaatcg |
113 |
Q |
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| T |
2032599 |
tacatttacttgtatacacacagcaacactaatttctagggtgcctctaaaaaaacactaaattttttagggtgataacatattttcttatcattaatca |
2032698 |
T |
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| Q |
114 |
atactatttatacttcactgtgtaaagtgttatattttcaagcaatgtaatgtaac----------tgtttctagcatatatatttaacacaacccttca |
203 |
Q |
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| T |
2032699 |
atactatttatacttcactgtgtaaagtgttatattttcaagcaatgtaatgtaactgtttataactgtttctagcatatatatttaacacaacccttca |
2032798 |
T |
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| Q |
204 |
aagtgctaagaggaagtagaaagccaattccactggcaaggcaatgagcattcctaacaagatcctattaacaagaaacaagaacagcatcaaatcttaa |
303 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2032799 |
aagtgctaagaggaagtagaaagccaattccaccggcaaggcaatgagcattcctaacaagatcctattaacaagaaacaagaacagcatcaaatcttaa |
2032898 |
T |
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| Q |
304 |
gcaatgtaaaatatatatgtattaaaaagtttatgaaagatgctttgacattactacttacgcagtgcttaa |
375 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2032899 |
acaatgtaaa--atatatgtatt-aaaagtttatgaaagatgctttgaaattactacttacgcagtgcttaa |
2032967 |
T |
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