View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16884_low_3 (Length: 352)
Name: NF16884_low_3
Description: NF16884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16884_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 20649100 - 20648763
Alignment:
| Q |
9 |
catcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattgc |
108 |
Q |
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| T |
20649100 |
catcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattcc |
20649001 |
T |
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| Q |
109 |
tttagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaa |
208 |
Q |
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| T |
20649000 |
tttagttggccacgatacaaaagttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaa |
20648901 |
T |
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| Q |
209 |
tttgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattgaagttttgtata |
308 |
Q |
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| T |
20648900 |
tatgatactggtatgtttcgcaattgggatatcgatgatggttacatctttggggtagatgaaattaaacccttcaataggagcatgaaagttttgtata |
20648801 |
T |
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| Q |
309 |
ctgatcatgttcccgagtatactgctcctgatgatgtc |
346 |
Q |
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| T |
20648800 |
ctgatcatgttccggagtatactgctcctgatgatgtc |
20648763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 20633001 - 20632667
Alignment:
| Q |
9 |
catcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattgc |
108 |
Q |
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| T |
20633001 |
catcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattcc |
20632902 |
T |
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| Q |
109 |
tttagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaa |
208 |
Q |
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| T |
20632901 |
tttcgctggccacgatacaa---ttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaa |
20632805 |
T |
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| Q |
209 |
tttgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattgaagttttgtata |
308 |
Q |
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| T |
20632804 |
tatgatactggtatgtttcgcaattgggatatcgatgatggttacatctttgggggatatgattttaaacacttcaataagagcatgaaagttttgtata |
20632705 |
T |
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| Q |
309 |
ctgatcatgttcccgagtatactgctcctgatgatgtc |
346 |
Q |
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| T |
20632704 |
ctgatcatgttccggagtatactgctcctgatgatgtc |
20632667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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