View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16885_high_3 (Length: 324)
Name: NF16885_high_3
Description: NF16885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16885_high_3 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 6011 - 6332
Alignment:
| Q |
18 |
ctgtggttcctccctctggtgagaccaaagctttcttcctggaggaaatcttgcaaaacctcctcctcgtcacataactaagaattgatgagtttctagc |
117 |
Q |
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| T |
6011 |
ctgtggttcctccctctggtgagaccaaacctttcctccttgaggacatcttgcaaagcctcctcctcgtcacataactatgaattgatgagtttatagc |
6110 |
T |
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| Q |
118 |
cagctatatcattttgtacttgtaattttgtgtgcgcttttgtattatattg----------------cttctcttttatcaatatatcatgtgcttgta |
201 |
Q |
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| T |
6111 |
cagctatatcattttgtacttgtaattttgtgtgtgcttttgtattatattgtgagtgtggagaattacttctcttttatcaatatatcatgtgcttgta |
6210 |
T |
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| Q |
202 |
ataatagttaataataaaatgcataatattttcattgaaaaacaacaannnnnnnacttttcaaattgaaattgaagttgtaatcaaataagaaatttat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6211 |
ataatagttaataataaaatgcataatattttcattgaaaaacaacaatttttttacttttcaaattgaaattgaagttgtaatcaaataagaaatttat |
6310 |
T |
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| Q |
302 |
tatgcaatctttcatctttatc |
323 |
Q |
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|||||||||||||||||||||| |
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| T |
6311 |
tatgcaatctttcatctttatc |
6332 |
T |
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