View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16885_high_5 (Length: 315)
Name: NF16885_high_5
Description: NF16885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16885_high_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 136 - 315
Target Start/End: Original strand, 50407631 - 50407810
Alignment:
| Q |
136 |
agagataacgttaatagcaagcgggtggacaagagaagacatggagtttccaagtaaaattgacgtatttccaatccaactctaattattaagtagagtc |
235 |
Q |
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| T |
50407631 |
agagataacgttaatagcaagcgggtggacaagagaagacatggagtttccaagtagaattgacgtattttcaatacaactctaattattaagtagagtc |
50407730 |
T |
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| Q |
236 |
aataattttagagattgaactgatctctcttcgtgctgtgcatgcatgcatgtgaccacttagattagatttcctccgac |
315 |
Q |
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| T |
50407731 |
aataatcttagagattgaactgatctctcttcgtgctgtgcatgcatgcatgtgaccacttagattagatttcctccgac |
50407810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 50407510 - 50407559
Alignment:
| Q |
52 |
aatcaattgagtacttacgcaattgaaccaacctttattgacatgagata |
101 |
Q |
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| T |
50407510 |
aatcaattgagtacttacgcaattgaaccaacctttattgacatgagata |
50407559 |
T |
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