View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16885_high_7 (Length: 303)

Name: NF16885_high_7
Description: NF16885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16885_high_7
NF16885_high_7
[»] chr4 (1 HSPs)
chr4 (9-303)||(30526751-30527045)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 30527045 - 30526751
Alignment:
Q  9 agcagagacgggagagggatccatacaaggagaagaagaaatctggatcagatgaagaatatatgattaaagagaaaaagaaatgatacatgatcaaata 108  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  30527045 agcaaagacgggagagggatccatacaaggagaagaataaatctgcatcagatgaagtatatatgactaaagagaaaaagaaatgatacatgatcaaata 30526946  T
Q  109 gttattatttaatcaatatatttggttctattgtatactctatttatcaaattggggaatgaaaagtaatacgagaggatgatatgaatgcaatgaattc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||     
T  30526945 gttattatttaatcaatatatttggttctattgtatactctatttatcaatttggggaatgaaaaataatatgagaggatgatatgaacgcaatgaattt 30526846  T
Q  209 cattatattctatttcacttcattaatttatagaattccaaacaaatgaatataactctatacaacttgattccgcttaatttcatcgattcaaa 303  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30526845 cattatatttcatttcacttcattaatttatagaattccaaacaaatgaatataactctatacaacttgatttcgcttaatttcatcgattcaaa 30526751  T

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