View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16885_low_1 (Length: 294)
Name: NF16885_low_1
Description: NF16885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16885_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 8412455 - 8412724
Alignment:
| Q |
7 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412455 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8412554 |
T |
|
| Q |
107 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8412555 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
8412654 |
T |
|
| Q |
207 |
ctgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8412655 |
ctgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8412724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 8434553 - 8434822
Alignment:
| Q |
7 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434553 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8434652 |
T |
|
| Q |
107 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434653 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
8434752 |
T |
|
| Q |
207 |
ctgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8434753 |
ctgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8434822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 8394994 - 8394725
Alignment:
| Q |
7 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8394994 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8394895 |
T |
|
| Q |
107 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8394894 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
8394795 |
T |
|
| Q |
207 |
ctgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8394794 |
ctgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8394725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 8406335 - 8406560
Alignment:
| Q |
7 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406335 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8406434 |
T |
|
| Q |
107 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406435 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
8406534 |
T |
|
| Q |
207 |
ctgcatagagttgaactgtagcatta |
232 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8406535 |
ctgcatagagttgaactgtagcatta |
8406560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 8395237 - 8395012
Alignment:
| Q |
7 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8395237 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgaga |
8395138 |
T |
|
| Q |
107 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395137 |
gtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaaga |
8395038 |
T |
|
| Q |
207 |
ctgcatagagttgaactgtagcatta |
232 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8395037 |
ctgcatagagttgaactgtagcatta |
8395012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 8431496 - 8431758
Alignment:
| Q |
20 |
agagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatattta |
119 |
Q |
| |
|
|||||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
8431496 |
agagcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgttta |
8431595 |
T |
|
| Q |
120 |
ttgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttg |
219 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
8431596 |
ttgagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttg |
8431690 |
T |
|
| Q |
220 |
aactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgttttgatgatgt |
287 |
Q |
| |
|
|| ||| || |||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
8431691 |
aattgtggctttagaatttgtagaatgcttttgttgttgatcttgtaatatttctgttttgttgatgt |
8431758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 8417746 - 8417882
Alignment:
| Q |
77 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
176 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | |||||||||||||| |
|
|
| T |
8417746 |
gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca |
8417845 |
T |
|
| Q |
177 |
tttctattctgtctgatacagcttccaagactgcata |
213 |
Q |
| |
|
|||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8417846 |
tttcaattctgtcagaaacaacttccaagactgcata |
8417882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
| Q |
77 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
176 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
8375475 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca |
8375376 |
T |
|
| Q |
177 |
tttctattctgtctgatacagcttccaagactgcata |
213 |
Q |
| |
|
|||| | ||| || || || |||||||||| |||||| |
|
|
| T |
8375375 |
tttcaactctatcagaaactgcttccaagattgcata |
8375339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
| Q |
77 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
176 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| ||||||| |
|
|
| T |
8439628 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca |
8439727 |
T |
|
| Q |
177 |
tttctattctgtctgatacagcttccaagactgcata |
213 |
Q |
| |
|
|||| | ||| || || || |||||||||| |||||| |
|
|
| T |
8439728 |
tttcaactctatcagaaactgcttccaagattgcata |
8439764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
| Q |
101 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
200 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8368812 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8368911 |
T |
|
| Q |
201 |
ccaagactgcatagagttga |
220 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8368912 |
caagaattgcatagagttga |
8368931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
| Q |
101 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
200 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8400598 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8400499 |
T |
|
| Q |
201 |
ccaagactgcatagagttga |
220 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8400498 |
caagaattgcatagagttga |
8400479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
| Q |
101 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
200 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8422175 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8422076 |
T |
|
| Q |
201 |
ccaagactgcatagagttga |
220 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8422075 |
caagaattgcatagagttga |
8422056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
| Q |
84 |
cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat |
183 |
Q |
| |
|
||||||| |||| ||| ||||| || ||||| || || |||||||||| ||| | ||||| |||| |||||||| || | ||| | ||||||||| || |
|
|
| T |
8404470 |
cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat |
8404569 |
T |
|
| Q |
184 |
tctgtctgatacagcttccaagactgcatagagtt |
218 |
Q |
| |
|
||||||||||||||| ||| | | ||||||||||| |
|
|
| T |
8404570 |
tctgtctgatacagcctccgaaattgcatagagtt |
8404604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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