View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16886_low_1 (Length: 395)
Name: NF16886_low_1
Description: NF16886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16886_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 595442 - 595795
Alignment:
| Q |
8 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgctcaaactaatt |
107 |
Q |
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| T |
595442 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgttcaaactaatt |
595541 |
T |
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| Q |
108 |
ttagtactattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtc |
207 |
Q |
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| T |
595542 |
ttagtactattttaccaatcatagcaaaaatggattactgtcttgattgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtc |
595641 |
T |
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| Q |
208 |
tactttagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaa |
307 |
Q |
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| T |
595642 |
tactttagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaa |
595741 |
T |
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| Q |
308 |
ggtagcagcttttggtgttcaatatcaatcaaatcttccttttcgctctttaca |
361 |
Q |
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| T |
595742 |
ggtagcagcttttggtgttcaatatcaatcaaatcttccttttcgctctttaca |
595795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 23962413 - 23962328
Alignment:
| Q |
259 |
ttaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcagcttttggtgttcaatatcaatcaaatctt |
344 |
Q |
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| T |
23962413 |
ttaaaggtatgtcattgtcttttcgtgcggtgttggaaacttcttcgaaggtagtagcttttgatgttcaatatcaatcaagtctt |
23962328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 4590038 - 4590129
Alignment:
| Q |
118 |
tttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtcta |
209 |
Q |
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| T |
4590038 |
tttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgtttttagtttgttgacagaccagggagaattcgagagtcgtcta |
4590129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 4603679 - 4603770
Alignment:
| Q |
115 |
tattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgt |
206 |
Q |
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| T |
4603679 |
tattttaccaatcatagcagaattaaattactatcctgaatgctttacttgtttttaatttgtcgacaggtcagtgagaattcgagaatcgt |
4603770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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