View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16886_low_5 (Length: 227)
Name: NF16886_low_5
Description: NF16886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16886_low_5 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 51772397 - 51772612
Alignment:
| Q |
1 |
gcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatctcc |
100 |
Q |
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| T |
51772397 |
gcggtattttagtgtgagtgaggacgagagcctgttgaaaatttcgcagtgttatctatccaccacatctggccctctagccggtctcctcttcatctcc |
51772496 |
T |
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| Q |
101 |
aatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcccagattaatat |
200 |
Q |
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| T |
51772497 |
aatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcccagattaatat |
51772596 |
T |
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| Q |
201 |
acacaaacctattcat |
216 |
Q |
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|||||||||||||||| |
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| T |
51772597 |
acacaaacctattcat |
51772612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 51780285 - 51780438
Alignment:
| Q |
33 |
tgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatc |
132 |
Q |
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| T |
51780285 |
tgttgaaagtttctcactgttatctttccaccacatctggccctctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatc |
51780384 |
T |
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| Q |
133 |
aataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaag |
186 |
Q |
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| T |
51780385 |
aataaaagtctataatcagaaaggtcaaatgtgtaggatccgctataaggtaag |
51780438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 51808013 - 51808160
Alignment:
| Q |
42 |
tttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagt |
141 |
Q |
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| T |
51808013 |
tttcacagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagtgagagatcaataaaagt |
51808112 |
T |
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| Q |
142 |
ctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcc |
189 |
Q |
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| T |
51808113 |
cttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcc |
51808160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 51804022 - 51804206
Alignment:
| Q |
4 |
gtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaat |
103 |
Q |
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| T |
51804022 |
gtattttagtgtgagagaaggagagaggctatcaaaagtttcgcagtgttatctttccaccacatccggtcctctatctggtctcctcttcatctccaat |
51804121 |
T |
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| Q |
104 |
gagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
188 |
Q |
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| T |
51804122 |
gaaaaggtggccttctgcagtgagagaacaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
51804206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 12196221 - 12196136
Alignment:
| Q |
50 |
tgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaat |
135 |
Q |
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| T |
12196221 |
tgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtagtgagagatcaat |
12196136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 51761423 - 51761472
Alignment:
| Q |
26 |
gagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcc |
75 |
Q |
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| T |
51761423 |
gagaggctgttgaaagtttcacactgttatctgtccaccacatctggtcc |
51761472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 6927 - 7082
Alignment:
| Q |
33 |
tgttgaaaatttcgcagtgttatctatccaccacatctggtcct--ctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacaga |
130 |
Q |
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| T |
6927 |
tgttgaaagtttctcactgttatctttccaccacatctggcccctcctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacaga |
7026 |
T |
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| Q |
131 |
tcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaag |
186 |
Q |
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| T |
7027 |
tcaataaaagtctataatcagaaaggtcaaatgtgtaggatccgctataaggtaag |
7082 |
T |
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