View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16886_low_6 (Length: 202)
Name: NF16886_low_6
Description: NF16886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16886_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 8004571 - 8004403
Alignment:
| Q |
15 |
cagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacaga |
114 |
Q |
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| T |
8004571 |
cagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacaga |
8004472 |
T |
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| Q |
115 |
taagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgacc |
183 |
Q |
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| T |
8004471 |
taagaaaaggttcatcccggtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgacc |
8004403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 7900541 - 7900703
Alignment:
| Q |
22 |
aacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaa |
121 |
Q |
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| T |
7900541 |
aacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaa |
7900640 |
T |
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| Q |
122 |
agattcatcccagtaagcaatgattgtggacagtttgcagtacaatt-aattgaaggttgacc |
183 |
Q |
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| T |
7900641 |
aggttcatcccagtaagcagtgattgtggacagtttgcagtaaaattaaattgaaggttgacc |
7900703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 51518882 - 51518723
Alignment:
| Q |
24 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
123 |
Q |
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| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
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| Q |
124 |
attcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgacc |
183 |
Q |
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| T |
51518782 |
gttcatcccggtcagcaatgattgtggacaatttgcagtacagtcaattgaaggttgacc |
51518723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 1300350 - 1300449
Alignment:
| Q |
84 |
gaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgacc |
183 |
Q |
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| T |
1300350 |
gaaaccattgaaaaacaatgacacttactgataagaaaaggttcatcccagtcagcagtgattgtggagaatttgcagtacagtcaattgaaggttgacc |
1300449 |
T |
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