View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16887_high_1 (Length: 502)
Name: NF16887_high_1
Description: NF16887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16887_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 275 - 484
Target Start/End: Original strand, 35266275 - 35266484
Alignment:
| Q |
275 |
gggcgatggcgctgaacacggtgtcatcggtttctctttctcaagtgctacgtctctccgatacaatcggtaaccgtcacttgttcgtagacttcgctcc |
374 |
Q |
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| T |
35266275 |
gggcgatggcgctgaacacggtgtcatcggtttctctttctcaagtgctacgtctctccgatacaatcggtaaccgtcacttgttcgtagacttcgctcc |
35266374 |
T |
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| Q |
375 |
attccgccgtaataccaagcggtgcaaccgtagattgacgccggcgattctccgtcggagctccgttaaagctgttcttcaacttgataataatcatctc |
474 |
Q |
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| T |
35266375 |
attccgccgtaataccaagcggtgcaaccgtagattgacgccggcgattctccgtcggagctccgttaaagctgttcttcaacttgataataatcatctc |
35266474 |
T |
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| Q |
475 |
aatcctgctc |
484 |
Q |
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|||||||||| |
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| T |
35266475 |
aatcctgctc |
35266484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 35266005 - 35266202
Alignment:
| Q |
10 |
acatcatcataccctttttat-caccatccaataatccaggaatttatgatagaacaccgtataaccatagaccacatcacatcaaacaaaaacccagtg |
108 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35266005 |
acatcatcataccctttttattcaccatccaataatccaggaatttatgatagaacaccgtataaccatagaccacaccacatcaaacaaaaacccagtg |
35266104 |
T |
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| Q |
109 |
agactagcactttcacaagttcaagatgaagattgaaaaggaatgagaagttggtggtgtatatgaattaagtactttgtgacctcttcttcctttta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35266105 |
agactagcactttcacaagttcaagatgaagattgaaaaggaatgagaagttggtggtgtatatgaattaagtactttgtgacctcttcttcctttta |
35266202 |
T |
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