View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16887_low_2 (Length: 418)
Name: NF16887_low_2
Description: NF16887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16887_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 73 - 399
Target Start/End: Original strand, 37969083 - 37969409
Alignment:
| Q |
73 |
ggccgcgcccaccatgacaatatgtacatcgttcaatttccaaaggatcaagtctaccgcgttccaccaagtgaaaatgcattcatcgttgaaagttatc |
172 |
Q |
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| T |
37969083 |
ggccgcgcccaccatgacaatatgtacatcgttcaatttccaaaggatcaagtctaccgcgttccaccaagtgaaaatgcattcatcgttgaaagttatc |
37969182 |
T |
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| Q |
173 |
gtaatactaccaaggataagnnnnnnnnnnnncaacgtggttgttgttgccctcgattcttgctcaccattgttttaatccttgttacaatcgttgccgt |
272 |
Q |
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| T |
37969183 |
gcaatactaccaatgataagaaaaagaaaaaacaacgtggttgttgttgccctcgattcttgctcaccattgttttaatccttgttacaatcgttgctgt |
37969282 |
T |
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| Q |
273 |
tgttggaataacattagccacattgttctttgttttcaacccagagggacccacatttactattacccgctttgaggtaaaaaacgtcactaggccacca |
372 |
Q |
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| T |
37969283 |
tgttggaataacattagccacattgttctttgttttcaacccagagggacccacatttactattacccgctttgaggtaaaaaacgttactaggccacca |
37969382 |
T |
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| Q |
373 |
cattatgaaatttatttgaaggctaag |
399 |
Q |
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| T |
37969383 |
cattatgaaatttatttgaaggctaag |
37969409 |
T |
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